Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1520 ATGGAGAAGAAAGGCAAAAGAAGAAGGCGACAGAAAAAGCTTGAGTTCCCAGCAATGGCTGCACTGCTTTTCTTATTCTTCAGTTTATCTCTCGCCAACGACAATCCACAACAACAACATTCCTCCCAACAAATGGTAGAAAATTTGGTGGAGAACAACAACAAATCAATGTTGTCACGCGACGTAACCTTCGAATGGCAGAATCATGGACAGGTGGTAATTGACAATGGGTTAGTTCGAGTCACATTATCTCGTCCAGAAGGCAATGTTATTGGCCTAAAATACAAGGGTATTGATAACGTACTTGAAATTCACAACCCACAATATAACAGAGGCTATTGGGACGTGGTTTGGAACCAGCCAAATAGAGCTAGTGCCACGGACAGAGTAAGAGCGACCAATTTCAAAGTGATTACGGCCAACAGTGACCAGATAGAGCTTTCATTCACCAAAACTTGGGATCCTTCTGACTCTTTTTCACTCCCTTTGAACATAGACAAAAGGTATATTCTTCGACGTGGTGATTCTGGGTTCTATTCATATAGCATATTTGAACGACTTGATGGATGGCCTCAAATTGATGTTGATCAAATTAGAATTGCCTACAAACTTCGAGGGGACAAATTTCATTACATGGCGGTATCAGACGATAGACAAAGAATCATGCCAACATTACAGGATCGTCTAACAGGACGACCTCTAGCTTATCCGGAGGCTGTTTTCTTAACTCGACCCACCAATTCTAACCTCAAAGGAGAGGTGGACGATAAGTACCAATACTCCTTAGAAAATATGGAGAACAAGGTTCATGGATGGGAATCGAATGAGCCACACGTGGGATTCTGGATGATCACGCCCAGTGATGAGTTTCGCACGGCGGGGCCCCTCAAGCAAGATCTCACTTCCCACGTCGGCCCCACCACTCTCTCCATGTTTGTGAGTACGCATTATGCGGGTAAAGAAGTTTCCATGAGATTTGGAGAGGGTGAGGCTTGGAAGAAGGTTTTCGGACCGGTTTTCACTTATCTAAACTCGGATCCGACCGGCACTGAAAATCTCGGTTCACTATGGGAAGATGCTAAAAATCAGATGAGGATAGAAACAAGTAAGTGGCCATACAACTTTGTTGAATCAGAAGACTTTCCCTCGTCCGACCAAAGAGGAATCGTGACTGGTCGATTACTGGTCCGAGATAGATACGCTAAGATTTCACTGATGTGGGCCGATTCGGCTTATGTGGGCCTCGCTGCTCCCGGGGAATTAGGGTCTTGGCAAAAAGAAAGCAAGGGATATCAATTCTGGACACGCACAGACGAGCAAGGATACTTCTCAATCGATAACATAAGGCCTGGAAACTACAATCTCTATGCTTGGGTACCTGGTGTCATTGGAGATTACAAGTACGACGATGTAATCACCGTCGCACCAAGGAGTTCCACTAGCCTAAACTTGTTGGTCTATGACCCTCCAAGACAAGGCCCAACTTTGTGGGAGATTGGTGTCCCAGATAGGACGGCGGCTGAGTTCTATATACCGAATCCCCAACCCACCCTCATGAACCACCTTTACAACAATTCCAAATTCCACACCCAAGATAATTTTCGACAGTATGGTCTTTGGGATCGTTATTCTGAATTGTATCCCGATCAAGATCTCGTCTACAACGTCGCCACCGACAATTACCGTCGTCATTGGTTCTTCGCTCATGTCACAAGAGCCACTCATTTAGACACCTACGAGTCAACCACTTGGCAAATTTTGTTTCGTCTTCAAGGGCCTAAACAGACCGGTAACTATATGCTCCGATTGGCCTTGGCCTCCTCTACCGAGGCGGTGGTCGATATCCGGTTCAACAATCCATCTGCCAGACGGGCTCATTTCACGACCGGATATTGGTCCTCAGGAAGAGATAACGCCATTGCCAGACATGGGATTCATGGGCTTTATTGGTTGTTCAACTTCGAGGTTCCAAGTGAATATTTGGTAGAAGATGAAAACATAATCTATCTTACACAGAGAAGACATACAGGGCCCTTTCAAGGTGTAATGTACGACTACATACGATTTGAAGGTGTAGAGTAA 2082 45.24 MEKKGKRRRRQKKLEFPAMAALLFLFFSLSLANDNPQQQHSSQQMVENLVENNNKSMLSRDVTFEWQNHGQVVIDNGLVRVTLSRPEGNVIGLKYKGIDNVLEIHNPQYNRGYWDVVWNQPNRASATDRVRATNFKVITANSDQIELSFTKTWDPSDSFSLPLNIDKRYILRRGDSGFYSYSIFERLDGWPQIDVDQIRIAYKLRGDKFHYMAVSDDRQRIMPTLQDRLTGRPLAYPEAVFLTRPTNSNLKGEVDDKYQYSLENMENKVHGWESNEPHVGFWMITPSDEFRTAGPLKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFTYLNSDPTGTENLGSLWEDAKNQMRIETSKWPYNFVESEDFPSSDQRGIVTGRLLVRDRYAKISLMWADSAYVGLAAPGELGSWQKESKGYQFWTRTDEQGYFSIDNIRPGNYNLYAWVPGVIGDYKYDDVITVAPRSSTSLNLLVYDPPRQGPTLWEIGVPDRTAAEFYIPNPQPTLMNHLYNNSKFHTQDNFRQYGLWDRYSELYPDQDLVYNVATDNYRRHWFFAHVTRATHLDTYESTTWQILFRLQGPKQTGNYMLRLALASSTEAVVDIRFNNPSARRAHFTTGYWSSGRDNAIARHGIHGLYWLFNFEVPSEYLVEDENIIYLTQRRHTGPFQGVMYDYIRFEGVE 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34722312 34726640 + CePI673135_04g015200.1 Cec04g1520 201002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1520 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 691 IPR051850 -
Cec04g1520 693 CDD RGL4_C 497 690 - -
Cec04g1520 693 Pfam Polysaccharide lyase family 4, domain II 409 481 IPR029413 -
Cec04g1520 693 CDD RGL4_N 64 348 - -
Cec04g1520 693 Gene3D - 493 689 - -
Cec04g1520 693 CDD RGL4_M 386 483 IPR029413 -
Cec04g1520 693 SUPERFAMILY Galactose-binding domain-like 493 690 IPR008979 -
Cec04g1520 693 FunFam Rhamnogalacturonate lyase B 383 483 - -
Cec04g1520 693 Pfam Rhamnogalacturonate lyase family 66 254 IPR010325 -
Cec04g1520 693 SUPERFAMILY Starch-binding domain-like 429 485 IPR013784 GO:0030246(InterPro)
Cec04g1520 693 Gene3D - 383 485 - -
Cec04g1520 693 Pfam Polysaccharide lyase family 4, domain III 495 689 IPR029411 -
Cec04g1520 693 SUPERFAMILY Galactose mutarotase-like 68 353 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cec04g1520 693 Gene3D - 64 353 IPR014718 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1520 Cec-Chr4:34722312 Cec11g1529 Cec-Chr11:29542643 2.30E-225 dispersed
Cec10g0821 Cec-Chr10:15293925 Cec04g1520 Cec-Chr4:34722312 1.30E-236 transposed
Cec11g1528 Cec-Chr11:29520212 Cec04g1520 Cec-Chr4:34722312 4.50E-200 wgd
Cec04g1520 Cec-Chr4:34722312 Cec08g1183 Cec-Chr8:23723706 3.10E-214 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1520 K18195 - csv:101206696 1125.15