Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g1520 | ATGGAGAAGAAAGGCAAAAGAAGAAGGCGACAGAAAAAGCTTGAGTTCCCAGCAATGGCTGCACTGCTTTTCTTATTCTTCAGTTTATCTCTCGCCAACGACAATCCACAACAACAACATTCCTCCCAACAAATGGTAGAAAATTTGGTGGAGAACAACAACAAATCAATGTTGTCACGCGACGTAACCTTCGAATGGCAGAATCATGGACAGGTGGTAATTGACAATGGGTTAGTTCGAGTCACATTATCTCGTCCAGAAGGCAATGTTATTGGCCTAAAATACAAGGGTATTGATAACGTACTTGAAATTCACAACCCACAATATAACAGAGGCTATTGGGACGTGGTTTGGAACCAGCCAAATAGAGCTAGTGCCACGGACAGAGTAAGAGCGACCAATTTCAAAGTGATTACGGCCAACAGTGACCAGATAGAGCTTTCATTCACCAAAACTTGGGATCCTTCTGACTCTTTTTCACTCCCTTTGAACATAGACAAAAGGTATATTCTTCGACGTGGTGATTCTGGGTTCTATTCATATAGCATATTTGAACGACTTGATGGATGGCCTCAAATTGATGTTGATCAAATTAGAATTGCCTACAAACTTCGAGGGGACAAATTTCATTACATGGCGGTATCAGACGATAGACAAAGAATCATGCCAACATTACAGGATCGTCTAACAGGACGACCTCTAGCTTATCCGGAGGCTGTTTTCTTAACTCGACCCACCAATTCTAACCTCAAAGGAGAGGTGGACGATAAGTACCAATACTCCTTAGAAAATATGGAGAACAAGGTTCATGGATGGGAATCGAATGAGCCACACGTGGGATTCTGGATGATCACGCCCAGTGATGAGTTTCGCACGGCGGGGCCCCTCAAGCAAGATCTCACTTCCCACGTCGGCCCCACCACTCTCTCCATGTTTGTGAGTACGCATTATGCGGGTAAAGAAGTTTCCATGAGATTTGGAGAGGGTGAGGCTTGGAAGAAGGTTTTCGGACCGGTTTTCACTTATCTAAACTCGGATCCGACCGGCACTGAAAATCTCGGTTCACTATGGGAAGATGCTAAAAATCAGATGAGGATAGAAACAAGTAAGTGGCCATACAACTTTGTTGAATCAGAAGACTTTCCCTCGTCCGACCAAAGAGGAATCGTGACTGGTCGATTACTGGTCCGAGATAGATACGCTAAGATTTCACTGATGTGGGCCGATTCGGCTTATGTGGGCCTCGCTGCTCCCGGGGAATTAGGGTCTTGGCAAAAAGAAAGCAAGGGATATCAATTCTGGACACGCACAGACGAGCAAGGATACTTCTCAATCGATAACATAAGGCCTGGAAACTACAATCTCTATGCTTGGGTACCTGGTGTCATTGGAGATTACAAGTACGACGATGTAATCACCGTCGCACCAAGGAGTTCCACTAGCCTAAACTTGTTGGTCTATGACCCTCCAAGACAAGGCCCAACTTTGTGGGAGATTGGTGTCCCAGATAGGACGGCGGCTGAGTTCTATATACCGAATCCCCAACCCACCCTCATGAACCACCTTTACAACAATTCCAAATTCCACACCCAAGATAATTTTCGACAGTATGGTCTTTGGGATCGTTATTCTGAATTGTATCCCGATCAAGATCTCGTCTACAACGTCGCCACCGACAATTACCGTCGTCATTGGTTCTTCGCTCATGTCACAAGAGCCACTCATTTAGACACCTACGAGTCAACCACTTGGCAAATTTTGTTTCGTCTTCAAGGGCCTAAACAGACCGGTAACTATATGCTCCGATTGGCCTTGGCCTCCTCTACCGAGGCGGTGGTCGATATCCGGTTCAACAATCCATCTGCCAGACGGGCTCATTTCACGACCGGATATTGGTCCTCAGGAAGAGATAACGCCATTGCCAGACATGGGATTCATGGGCTTTATTGGTTGTTCAACTTCGAGGTTCCAAGTGAATATTTGGTAGAAGATGAAAACATAATCTATCTTACACAGAGAAGACATACAGGGCCCTTTCAAGGTGTAATGTACGACTACATACGATTTGAAGGTGTAGAGTAA | 2082 | 45.24 | MEKKGKRRRRQKKLEFPAMAALLFLFFSLSLANDNPQQQHSSQQMVENLVENNNKSMLSRDVTFEWQNHGQVVIDNGLVRVTLSRPEGNVIGLKYKGIDNVLEIHNPQYNRGYWDVVWNQPNRASATDRVRATNFKVITANSDQIELSFTKTWDPSDSFSLPLNIDKRYILRRGDSGFYSYSIFERLDGWPQIDVDQIRIAYKLRGDKFHYMAVSDDRQRIMPTLQDRLTGRPLAYPEAVFLTRPTNSNLKGEVDDKYQYSLENMENKVHGWESNEPHVGFWMITPSDEFRTAGPLKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFTYLNSDPTGTENLGSLWEDAKNQMRIETSKWPYNFVESEDFPSSDQRGIVTGRLLVRDRYAKISLMWADSAYVGLAAPGELGSWQKESKGYQFWTRTDEQGYFSIDNIRPGNYNLYAWVPGVIGDYKYDDVITVAPRSSTSLNLLVYDPPRQGPTLWEIGVPDRTAAEFYIPNPQPTLMNHLYNNSKFHTQDNFRQYGLWDRYSELYPDQDLVYNVATDNYRRHWFFAHVTRATHLDTYESTTWQILFRLQGPKQTGNYMLRLALASSTEAVVDIRFNNPSARRAHFTTGYWSSGRDNAIARHGIHGLYWLFNFEVPSEYLVEDENIIYLTQRRHTGPFQGVMYDYIRFEGVE | 693 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 34722312 | 34726640 | + | CePI673135_04g015200.1 | Cec04g1520 | 201002 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g1520 | 693 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 52 | 691 | IPR051850 | - | |
Cec04g1520 | 693 | CDD | RGL4_C | 497 | 690 | - | - | |
Cec04g1520 | 693 | Pfam | Polysaccharide lyase family 4, domain II | 409 | 481 | IPR029413 | - | |
Cec04g1520 | 693 | CDD | RGL4_N | 64 | 348 | - | - | |
Cec04g1520 | 693 | Gene3D | - | 493 | 689 | - | - | |
Cec04g1520 | 693 | CDD | RGL4_M | 386 | 483 | IPR029413 | - | |
Cec04g1520 | 693 | SUPERFAMILY | Galactose-binding domain-like | 493 | 690 | IPR008979 | - | |
Cec04g1520 | 693 | FunFam | Rhamnogalacturonate lyase B | 383 | 483 | - | - | |
Cec04g1520 | 693 | Pfam | Rhamnogalacturonate lyase family | 66 | 254 | IPR010325 | - | |
Cec04g1520 | 693 | SUPERFAMILY | Starch-binding domain-like | 429 | 485 | IPR013784 | GO:0030246(InterPro) | |
Cec04g1520 | 693 | Gene3D | - | 383 | 485 | - | - | |
Cec04g1520 | 693 | Pfam | Polysaccharide lyase family 4, domain III | 495 | 689 | IPR029411 | - | |
Cec04g1520 | 693 | SUPERFAMILY | Galactose mutarotase-like | 68 | 353 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cec04g1520 | 693 | Gene3D | - | 64 | 353 | IPR014718 | GO:0030246(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1520 | Cec-Chr4:34722312 | Cec11g1529 | Cec-Chr11:29542643 | 2.30E-225 | dispersed | |
Cec10g0821 | Cec-Chr10:15293925 | Cec04g1520 | Cec-Chr4:34722312 | 1.30E-236 | transposed | |
Cec11g1528 | Cec-Chr11:29520212 | Cec04g1520 | Cec-Chr4:34722312 | 4.50E-200 | wgd | |
Cec04g1520 | Cec-Chr4:34722312 | Cec08g1183 | Cec-Chr8:23723706 | 3.10E-214 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g1520 | K18195 | - | csv:101206696 | 1125.15 |