Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1524 ATGATTGCCTTCAACTCGTTTTCAACACGCGACCCCACCAATCGCGTGAGACTGGTTCCCGGTGCACATATGAGCTTCTTTGTCTCCTCAGGTTTAATTGTTACTATCTGTAATATGGGAACTCAAGGTCAAGCAGGATTAGTAGCACAAAAGAAGATGCAACCTCCTCAACCTGGAAGATTTGAAGATCGTGAAGATCTCATTAAATATGTTCGTGATTTTGGTGCTGATCAAGGATATGTGGTAACGATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTTGGTTGTGATAGAGGAGGCGTGTACCGTAATAGGCGTAAGATTGATGAGAATCCACGCAAAAGGAAAGCTAGCTCGCGCCTGATAAATTGCCCGTTTGAAGCAATTGGCAAGAAGGAAGATGATGCCTGGATGCTTACCATTAAAAATGGGGACCATAACCATGAGCCCTTAAAAGACATGTCAGAGCATCCTTACAGTCGCCGTTTTACTGAGGATGAAGTAAAGCAAATAAAACTGATGACTGAAGCTGGTATAAAACCACGTCAAGTGCTTAAAGCTCTCAAACAACACAATCCAGATCTGCAGTCAACACCAAGGCATTTGTATAACCTCAAAGCCAAAATTCGCCAAGGAAATCTATCAGAAAAAAATTTCAAGTCATGGAGACCTAATATTTCAGTTCCTACAAATAGTAGTCATACTGTCATTGGGGATTCAGTCAAGCAAAATCATCAGCTGAAGGTTCCTAATTTAATTGGAGGGGAATTTTTGGATTCGCACAACTGTCCAGTGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCATGTCCCTTTAACAACCTACGAAGAGTTTAAGGCTGCAGTTAATGCAGCCAAACAAGCTTTTCCCTCATGGAGAAACACACCAATTTCTACTCGTCAATGTGTTATGTTCAAGTTTCAGGAGCTCATCCTCAGGGACATGGATAAGCTTGTGACGAATATTGTCACAGAACAGGGAAAGACATTAAGGGATGCTCAAGATGATATCATCTGTGGTTTAGAGGTGGTTAAACATGCTTGTGGATTGGCCACTATGCAAATGGGGGAGTTCATCCCTAATGCAACTGATGGAATTGATTCGTACTGCATCCGAGAACCAATAGGTGTGTGTGCTGGGATATGCTCTTTAAACCATCCAGCAACAGTTTCCTTATGGATGTTTCCGATTGCAGTTACTTGTGGCAATACATTTGTTCTTAAGCCATGTGAAACACACCCGGGGGCTTCAATGTTGCTTGCTGCATTAGCAGTTGAGGCTGGCTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCATGATATCATCAACTATATATGTGATGATGAAGACATAAAAGCCATATCTTTTTCCAGTTCAAGTTCAGTTGGAAAGAACATATATGCTAGGGCTGCTACTACAGGAAAGCAAGTTCAGTCCCACTTTGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTAACATGGAAGCTACTTTAAGTGCTCTGGTTGATGCTGGATTTGGTACTGCTGGACGGACATGTTTGGCTATCGACATCGTTGTCTCCGTTGGGTGTTCAATTCTGTGGGAAGAAAAACTTGTGGAATGTGCCAAAGCACTTAAAGTGAATGTGGGGACAGATCCCAAAGCTGACCTTGGTCCTGTAATTACCAAACAGGTGAAAGATCGCTTTTGTAAATTAGTTCAAAGTGGCATTGAAGATGGTGCCAGACTTTTGCTTGACGGTAGAGATATTGTGGTCCCAGGATATGAAAATGGAAATTTTGTTGGTCCAACCATTTTATCTGATGTAACAACTGAAATGGAGTGCTACAAGGAAGAATTTTTTGGACCAGTTCTCCTTTGTATGCAGGCTGACAACCTAGAGGAGGCTATATCCATTGTAAACAGAAACAAGAACCGAAATGGAGCTTCCATATTCACAACTTCTGGCATTTATGCGAGGAAGTTTCAGAGTGACGTGGAAGTGGGAATGGTTGGCACCAATGTTGCTGTTACAGTTCCGTTGCCATCTTCCTTTAATGATAAGGCAGGACTGGAGTTTTACACCCAATTGAAAAGAGTGGCTCAACAGTGGAAGAACTCACCAAGTATTGGAGTGTCAATGGCGCTGCCTTCACCATCTGAGAGACATTTGAGATCCCGTGCTGTACCTTCCATGTTGGTTTCAACATCTGAGAAAGATTCACCTGGGATGCAGCACAAAAGTTTACCCCCATTGCCTTCCACATCTGAGAGGGATTCAGCTGGTGTCGCTGTACTGCTGCCGAACTCTCGAATATCTCAGACAGGTTTAACCAATGAAAGAGCCACCTCCTCTCCACCGACTCCTGATAGGGATTTGCACGGTCAGGGACTTTCCCTGATTTCTACCTTGTCATCAGAGGGGGACGTATCCAACCAAGATTTGTCTCCTGCTATGCTTTCAGCAGGCGATAGAGATTTACCTGGTCAAGCTGTGTCAGTGGCAACATCCCGATCATCTGAGCGACTGTATATACCTCAGAAATCTCATTGGAACGCAACCCTGAGGGCTGATTCAATTCCATCCAGTTCTGAGAGGATCCATGCGCCCTCATCGCACACAAACAACATCAAAGGGCAGGCATCTCGAACAACTCATCCGGCTTTGGTCTTAGCTGCAGAGGGGTTATATGTGCCATCATCTCATGACAGTATTTGTCTCATTAACCATAGAAATGATAGTACGGTTCCATCTCGAAGAACTGACAGCATGTGTCAATCATCAGAACGGGTATACATGCTAGCAACGTCCCATCTGAACGACACTATGAGTCGAACATTGCAGAGAACTGATACCTCCTTGTTTTCTTCTTCAGAGAGGCATTATGTGCCTCCCTCTTCTGATGGAAATGACCATATCAGCTTAGCTTCTCATACCGACGTTGCATTGCAATCAACCTCAGATAGAATGTACTTGTCTAGCTTGTCCAAGAGGAATGATAATATGGCTTCCGCTGCTTCTCAACAAGCCGAATCTTTAACATCCACTTCAGAGAGAATGTATATACCTCCATTAGTTCATAGAAATGCAGGTATGGCACCAAAATCGGAATGGCTATGCATTCCCGCACCTGCTGGATCTCAGAGAATGTACCCACAAGGTCCAATAGTTTCAGCAGATGAATTTCAAAGCCAAGGAGCATCATTAACATTGCCTGCATCACAAAGAATGTAA 3258 43.37 MIAFNSFSTRDPTNRVRLVPGAHMSFFVSSGLIVTICNMGTQGQAGLVAQKKMQPPQPGRFEDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDENPRKRKASSRLINCPFEAIGKKEDDAWMLTIKNGDHNHEPLKDMSEHPYSRRFTEDEVKQIKLMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNFKSWRPNISVPTNSSHTVIGDSVKQNHQLKVPNLIGGEFLDSHNCPVVDVINPATQEVVSHVPLTTYEEFKAAVNAAKQAFPSWRNTPISTRQCVMFKFQELILRDMDKLVTNIVTEQGKTLRDAQDDIICGLEVVKHACGLATMQMGEFIPNATDGIDSYCIREPIGVCAGICSLNHPATVSLWMFPIAVTCGNTFVLKPCETHPGASMLLAALAVEAGLPDGVLNIVHGTHDIINYICDDEDIKAISFSSSSSVGKNIYARAATTGKQVQSHFGGKSHAIIMPDANMEATLSALVDAGFGTAGRTCLAIDIVVSVGCSILWEEKLVECAKALKVNVGTDPKADLGPVITKQVKDRFCKLVQSGIEDGARLLLDGRDIVVPGYENGNFVGPTILSDVTTEMECYKEEFFGPVLLCMQADNLEEAISIVNRNKNRNGASIFTTSGIYARKFQSDVEVGMVGTNVAVTVPLPSSFNDKAGLEFYTQLKRVAQQWKNSPSIGVSMALPSPSERHLRSRAVPSMLVSTSEKDSPGMQHKSLPPLPSTSERDSAGVAVLLPNSRISQTGLTNERATSSPPTPDRDLHGQGLSLISTLSSEGDVSNQDLSPAMLSAGDRDLPGQAVSVATSRSSERLYIPQKSHWNATLRADSIPSSSERIHAPSSHTNNIKGQASRTTHPALVLAAEGLYVPSSHDSICLINHRNDSTVPSRRTDSMCQSSERVYMLATSHLNDTMSRTLQRTDTSLFSSSERHYVPPSSDGNDHISLASHTDVALQSTSDRMYLSSLSKRNDNMASAASQQAESLTSTSERMYIPPLVHRNAGMAPKSEWLCIPAPAGSQRMYPQGPIVSADEFQSQGASLTLPASQRM 1085
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34745256 34756738 + CePI673135_04g015240.1 Cec04g1524 201006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1524 1085 CDD ALDH_F6_MMSDH 250 712 IPR010061 GO:0004491(InterPro)
Cec04g1524 1085 Pfam Aldehyde dehydrogenase family 261 689 IPR015590 GO:0016491(InterPro)
Cec04g1524 1085 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 252 712 IPR010061 GO:0004491(InterPro)
Cec04g1524 1085 SUPERFAMILY ALDH-like 243 714 IPR016161 GO:0016491(InterPro)
Cec04g1524 1085 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 269 494 IPR016162 GO:0016491(InterPro)
Cec04g1524 1085 MobiDBLite consensus disorder prediction 740 804 - -
Cec04g1524 1085 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 254 501 - -
Cec04g1524 1085 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 495 689 IPR016163 GO:0016620(InterPro)
Cec04g1524 1085 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 495 694 - -
Cec04g1524 1085 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 53 726 IPR010061 GO:0004491(PANTHER)|GO:0004491(InterPro)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Cec04g1524 1085 MobiDBLite consensus disorder prediction 740 763 - -
Cec04g1524 1085 MobiDBLite consensus disorder prediction 775 798 - -
Cec04g1524 1085 MobiDBLite consensus disorder prediction 871 890 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1524 K00140 - - csv:101207178 1893.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1524 Cec-Chr4:34745256 Cec09g1759 Cec-Chr9:33075643 1.40E-192 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g1171 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 6.1e-212 733.8
Cec02g1743 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Cec06g1889 . 71 555 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.4e-154 542.0
Cec06g1889 . 1 555 Aldehyde Dehydrogenase Gene Family AT3G48000 76.0 3.5e-250 860.9
Cec02g1743 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 6.2e-247 850.1
Cec06g1171 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.6 1.5e-160 563.1
Cec02g1743 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 3.6e-170 594.7
Cec06g1889 . 50 399 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 2.7e-165 578.6
Cec06g1171 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 3.8e-103 372.1
Cec11g1632 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.8 9.1e-182 633.6
Cec11g1633 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 4.0e-177 618.2
Cec11g1632 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.3 2.6e-176 615.1
Cec11g1633 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.5 3.8e-175 611.3
Cec02g2438 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.2 6.2e-117 417.9
Cec07g0979 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 63.1 5.2e-184 641.0
Cec02g2438 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 55.5 1.9e-157 552.7
Cec02g1968 . 37 609 Aldehyde Dehydrogenase Gene Family AT1G79440 65.7 6.8e-214 740.3
Cec09g1759 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 1.3e-240 829.3
Cec04g1524 . 249 683 Aldehyde Dehydrogenase Gene Family AT2G14170 68.0 1.5e-180 629.8
Cec06g1867 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.4 2.5e-250 861.3
Cec06g1867 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.3 3.5e-252 867.5
Cec02g1787 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 9.2e-269 922.5
Cec01g1535 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.0 1.7e-260 895.2
Cec06g0463 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.1 3.5e-275 944.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010728 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 1 3 1 0 32