Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1534 ATGCATCTAATAGTTGAGAAGATACAACAGTTCAAAGTGAAGATTGAGCATAGTGCTCTCATCCTCAACCTTTTACGGCAAAGTTTGGCTGACGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTCCTTTCAACTGTAGCCTCATTCTCTTTCCGCTACTCATTGGTGGCTTTCCATCTTTCTGAAAAACCAACCCTAACCGCGTTTCCCTATCAAAAAGCAAGGCTAGTTATAGAGGTTGAAATGGCGAAAGAAAAAATCCAGATCAGGAAGATCGATAACGCCACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTTGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCAAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAATAGCAATTACACCCGATTAAACAAGGAAATTGCTGACAAAACTCATCAGCTAAGGCAGATGAGGGGAGAAGAACTCCAAACACTGAATATAGAGGAATTGCAGAAGCTAGAGAAGTCACTGGAGTCTGGATTGAGTCGTGTGATGGAGAAAAAGGGTGAACGGATCATGAAAGAGATCACCGACCTTCAAAGAAAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTTAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGGGTCGACCCCGAGATTTTGGTCGTGGAAGATGGCCAATCTTCGAACTCCGTCACTGAAGCTGGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAATTAGGTGAATCCAATTGGTTGCAGGCTGCCGTATTCCGGGTGATGGTGATGGTGATGGAACAAGAAGATGAACAGCTACCGATAAATGAATCCAATAAAGTGGACCTTCAAGCAGAGGCCCGCAAAGGCAACAACGAGTCAAATCTCTACTCGAAAACACGTCTTCGTCCTTGTGTAGTTAAAGTGGAACGAGCAGAGGCAAAATCAAAACCAGATCAGTCTGATTTATGGGCTCCTTTAGCTGATGAAGGGTGGAGGCCTTGTGTTGCTTCTTCAAAAGCTTCCTCACTACCGGGGAGCTCTGAAGGATATATTCAGGTGTTTCTTGATGGAGGGCTGAACCAGCAAAGAATGGGAATATGTGATGCAGTTGCAGTTGCAAAAATTCTAAATGCAACCCTTGTGATTCCCCACCTTGAAATTAATCCTGTCTGGAAAGATTCAAGTTCTTTCGTCGATATATTTGATGTGGATCACTTTATTAACGTATTGAAGGATGACATTTCTATAGTTAAAGAGTTGCCAGCTGACTTTTCTTGGAGTACTAGGGAATATTATGCTACAGCCATTCGGGCTACTAGAGTCAAAACAGCACCTGTTCATGCCTCAGCCAACTGGTATCTGGACAATGTTTTACCCGTATTACAGAGCTACGGTATTGCTGCCATTGCACCCTTCTCGCATCGTCTAGCTTTTGAGAACTTGCCTGATGAGATACAAAGGTTGCGCTGTAAGGTCAACTTTCAAGCATTAACTTTTGTTCCCCATATCCGAGAACTAGGAGACGCTCTCATCAGTCGGCTGCGGCATCCTTTGAATAAGGAGTCAAAGAAGGCTAACTACCTAAGTATGACCACTGATGCAAATGAACAAGGTCCATTGAAGTTTGTTGTCCTACACCTTCGATTTGAAAAGGACATGGCAGCTCATTCAGCCTGCGATTTTGGTGGAGGAAAGGCTGAAAAACTTGCTTTGGCCAAATATCGTCAAGTGCTCTGGCAGGGAAGGGTCCTTAACTCTCAGTTCACGGATGAGGAGTTGCGGAGTCAGGGTCGTTGCCCTTTGACACCTGAAGAAATCGGTTTGCTACTGGCTGCTTTGGGTTTTGACAACAATACCCGCCTATATTTGGCCTCCCACAAGGTATATGGTGGGGAAGCTAGGATTTTGACTTTGCGAAGTCTTTTCCCATTAATGGAAGATAAGAAGAGTCTCACTTCTGGAAATGAACTAGCCCAAATCAAAGGAAAGGCTTCTTTGCTAGCTGCGGTTGACTACTACGTAAGCATGCACAGTGACATTTTTATCTCGGCTTCTCCTGGAAATATGCATAATGCAATGGTGGGACATCGCACGTACGAGAACTTGAAGACCATAAGACCAAACATGGCATTGTTGGGACAACTTTTCATGAACAAAAGCATCATTTGGTCAGACTTTCAGCAGGCCACAGTAGAAGGCCACAAAAACAGACAAGGACAAATAAGGTTGAGAAAGCCAAAGCAGTCAATATACACATATCCAGCTCCTGACTGTGTTTGCCACTCTTGA 2466 44.65 MHLIVEKIQQFKVKIEHSALILNLLRQSLADELEFCFSRNGDFHFLSTVASFSFRYSLVAFHLSEKPTLTAFPYQKARLVIEVEMAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIADKTHQLRQMRGEELQTLNIEELQKLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMNAVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGESNWLQAAVFRVMVMVMEQEDEQLPINESNKVDLQAEARKGNNESNLYSKTRLRPCVVKVERAEAKSKPDQSDLWAPLADEGWRPCVASSKASSLPGSSEGYIQVFLDGGLNQQRMGICDAVAVAKILNATLVIPHLEINPVWKDSSSFVDIFDVDHFINVLKDDISIVKELPADFSWSTREYYATAIRATRVKTAPVHASANWYLDNVLPVLQSYGIAAIAPFSHRLAFENLPDEIQRLRCKVNFQALTFVPHIRELGDALISRLRHPLNKESKKANYLSMTTDANEQGPLKFVVLHLRFEKDMAAHSACDFGGGKAEKLALAKYRQVLWQGRVLNSQFTDEELRSQGRCPLTPEEIGLLLAALGFDNNTRLYLASHKVYGGEARILTLRSLFPLMEDKKSLTSGNELAQIKGKASLLAAVDYYVSMHSDIFISASPGNMHNAMVGHRTYENLKTIRPNMALLGQLFMNKSIIWSDFQQATVEGHKNRQGQIRLRKPKQSIYTYPAPDCVCHS 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34822053 34835183 - CePI673135_04g015340.1 Cec04g1534 201016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1534 821 MobiDBLite consensus disorder prediction 276 302 - -
Cec04g1534 821 FunFam Transcription factor, MADS-box 97 167 - -
Cec04g1534 821 SUPERFAMILY SRF-like 87 167 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1534 821 Pfam K-box region 175 255 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec04g1534 821 PRINTS MADS domain signature 122 143 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1534 821 PRINTS MADS domain signature 87 107 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1534 821 PRINTS MADS domain signature 107 122 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1534 821 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 94 141 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1534 821 Coils Coil 178 198 - -
Cec04g1534 821 ProSiteProfiles MADS-box domain profile. 85 145 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1534 821 Coils Coil 205 225 - -
Cec04g1534 821 Coils Coil 227 261 - -
Cec04g1534 821 Pfam GDP-fucose protein O-fucosyltransferase 409 758 IPR019378 -
Cec04g1534 821 CDD MADS_MEF2_like 86 161 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec04g1534 821 PANTHER O-FUCOSYLTRANSFERASE 2-RELATED 305 820 IPR052272 -
Cec04g1534 821 Gene3D - 97 166 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1534 821 SMART madsneu2 85 144 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g1534 821 ProSiteProfiles K-box domain profile. 171 261 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec04g1534 821 CDD O-FucT_plant 409 764 IPR024709 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1534 Cec-Chr4:34822053 Cec11g1480 Cec-Chr11:29004854 2.90E-78 dispersed
Cec10g1010 Cec-Chr10:22767397 Cec04g1534 Cec-Chr4:34822053 8.80E-14 dispersed
Cec10g1221 Cec-Chr10:26338971 Cec04g1534 Cec-Chr4:34822053 4.50E-23 dispersed
Cec01g0986 Cec-Chr1:13550692 Cec04g1534 Cec-Chr4:34822053 1.70E-79 transposed
Cec03g0651 Cec-Chr3:7068578 Cec04g1534 Cec-Chr4:34822053 1.30E-81 transposed
Cec05g2824 Cec-Chr5:38510445 Cec04g1534 Cec-Chr4:34822053 2.10E-88 transposed
Cec08g0216 Cec-Chr8:4037428 Cec04g1534 Cec-Chr4:34822053 3.40E-86 transposed
Cec09g1725 Cec-Chr9:32326637 Cec04g1534 Cec-Chr4:34822053 3.50E-19 transposed
Cec10g0980 Cec-Chr10:22215785 Cec04g1534 Cec-Chr4:34822053 1.00E-46 transposed
Cec04g1534 Cec-Chr4:34822053 Cec08g1200 Cec-Chr8:23902127 4.00E-197 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29378 PF10250 O-FucT 2.80E-63 CL0113 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1534 - - - 0.0