Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1542 ATGGCTGATAGTTTTTACTGTACAGAGAATGCCAATATTTGTTTTGATGATCAATTTGATTGTAATGGTACAAATAATGAGTTTGAGCGATTCTCAATTTCTCTGCCCCACCGAAGAACCCGTGACCCGAATGTTGACTGTCTCGGATCCGAGACTTTTCTGGGCTCTCCCTTAGAGAGTGAAGAGAGAATTAGAAGAATGGTTGAGAAAGAGATTGAACATTTGCCAACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGAAGAGACGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGTTTTGGACCTCTGAGTCTTTGTTTATCTATGAACTACTTGGACCGTTTCCTCTCAGTTTATCATTTGCCTATGGATAAAAGCTGGACTGCGCAGCTCCTGTCAGTAGCTTGTGTGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATAACTGTTGAGCAACACATACCAAGCCTATTCTTCTCTAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAGGAGAATTACAAGCACCAGATATGAATAAAGCAATCCTTTCTTTTCCGTATATGGAGAAAGAAAGAGTCATGAAGTGTATCGAACTGATTAGAGATTTGTCATTGATTAATAATATGTATGGAAATTCATTGGCTGGTAATGTTGGTGGTTCAGTTCCTCAGAGTCCAGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTATTAACTGCAGGCTCATGTGGTAATTCTTCTTCTTCTCATGACAGTCCAAACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATTCAAGTCCATCCAGTCCTGTCAATTGA 1095 39.45 MADSFYCTENANICFDDQFDCNGTNNEFERFSISLPHRRTRDPNVDCLGSETFLGSPLESEERIRRMVEKEIEHLPTHDYLKRMLSGDLDLKFRRDAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTAQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHIPSLFFSKSSQLILSTIKGIDFLEFRPSEIALAVAISISGELQAPDMNKAILSFPYMEKERVMKCIELIRDLSLINNMYGNSLAGNVGGSVPQSPVGVLDAACLSYKTEELLTAGSCGNSSSSHDSPNSKRRRQDRPSSNDDSSPSSPVN 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34912459 34914341 + CePI673135_04g015420.1 Cec04g1542 201024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1542 364 CDD CYCLIN_AtCycD-like_rpt1 94 191 - -
Cec04g1542 364 SUPERFAMILY Cyclin-like 59 193 IPR036915 -
Cec04g1542 364 SMART Cyclin_C_2 196 307 IPR004367 -
Cec04g1542 364 FunFam D2/4-type cyclin 77 189 - -
Cec04g1542 364 MobiDBLite consensus disorder prediction 328 364 - -
Cec04g1542 364 Gene3D - 65 282 - -
Cec04g1542 364 FunFam D6-type cyclin 190 281 - -
Cec04g1542 364 CDD CYCLIN_AtCycD-like_rpt2 196 283 - -
Cec04g1542 364 Pfam Cyclin, C-terminal domain 196 287 IPR004367 -
Cec04g1542 364 PANTHER CYCLINS 61 282 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cec04g1542 364 Pfam Cyclin, N-terminal domain 65 193 IPR006671 -
Cec04g1542 364 SUPERFAMILY Cyclin-like 178 306 IPR036915 -
Cec04g1542 364 SMART cyclin_7 99 187 IPR013763 -
Cec04g1542 364 Gene3D - 77 194 - -
Cec04g1542 364 ProSitePatterns Cyclins signature. 94 125 IPR048258 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1399 Cec-Chr4:33623813 Cec04g1542 Cec-Chr4:34912459 2.50E-36 dispersed
Cec04g1542 Cec-Chr4:34912459 Cec08g1670 Cec-Chr8:28028145 2.60E-47 dispersed
Cec02g1186 Cec-Chr2:27972102 Cec04g1542 Cec-Chr4:34912459 3.50E-32 transposed
Cec05g2278 Cec-Chr5:34146285 Cec04g1542 Cec-Chr4:34912459 3.90E-31 transposed
Cec10g1023 Cec-Chr10:22983748 Cec04g1542 Cec-Chr4:34912459 8.70E-53 transposed
Cec04g1542 Cec-Chr4:34912459 Cec08g1180 Cec-Chr8:23697968 1.90E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1542 K18810 - csv:101209378 568.926