Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1544 ATGGAGATGGCGGCAGCGAGTTACGACTCCCTGGCCAACTCAGGTGGCCGACTCAAAATCCCGACTAGTACGGACCAAATGATTTCAAGTACTGGACAGAGGAAACCCAAATACAGAGAGTGTTTGAAAAATCACGCAGTTGGCATTGGAGGTCACGCCCTTGACGGCTGCGGCGAATTTCTCGCCGCGGGTGCTGAAGGCACACTCGACGCTCTTAAATGCGCCGCTTGCAACTGCCACCGCAACTTCCACCGCAAGGAAACCGACAGCCTCAACCCGGCCGTAGGCGTCGGACTTGGAATCGGAGAGCCATTTCTATTGCCACACCCAGGGCAGTTTTCACCTTACTACCGGACTCCAGCTGGGTACCTCCACGTGGCGCCACACCACAGGCCATTAGCTCTCCCGTCGACATCAGGCGGCGGTGGCACCCACAGCAGAGAGGAGCAGGAGGATATGTCGAATCCCAGCGGCGGAGGCGGTGGAGGAGGAAGTAGTAGCTTTGGGAAGAAGAGATTTAGGACGAAGTTTACTCAAGAACAGAAGGACAGAATGCTGGGGCTGGCGGAGACATTGGGTTGGAGGATTCAAAAACACGATGAGGCGGTGGTGCAGCAGTTCTGTAACGACACCGGAGTGAAGCGGCACGTGCTTAAGGTGTGGATGCATAATAACAAGCACACTCTTGGTAAGAAACCCTAA 702 55.27 MEMAAASYDSLANSGGRLKIPTSTDQMISSTGQRKPKYRECLKNHAVGIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDSLNPAVGVGLGIGEPFLLPHPGQFSPYYRTPAGYLHVAPHHRPLALPSTSGGGGTHSREEQEDMSNPSGGGGGGGSSSFGKKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEAVVQQFCNDTGVKRHVLKVWMHNNKHTLGKKP 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34928549 34929250 - CePI673135_04g015440.1 Cec04g1544 201026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1544 233 SUPERFAMILY Homeodomain-like 157 231 IPR009057 -
Cec04g1544 233 Gene3D - 156 231 - -
Cec04g1544 233 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 38 87 IPR006456 -
Cec04g1544 233 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 37 87 IPR006456 -
Cec04g1544 233 NCBIfam homeobox domain, ZF-HD class 170 226 IPR006455 -
Cec04g1544 233 MobiDBLite consensus disorder prediction 132 170 - -
Cec04g1544 233 Pfam ZF-HD protein dimerisation region 37 88 IPR006456 -
Cec04g1544 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 229 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cec04g1544 233 FunFam Zinc-finger homeodomain protein 2 163 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1544 Cec-Chr4:34928549 Cec11g0010 Cec-Chr11:170889 6.40E-47 dispersed
Cec10g0867 Cec-Chr10:18775665 Cec04g1544 Cec-Chr4:34928549 1.70E-40 transposed
Cec04g1544 Cec-Chr4:34928549 Cec08g1176 Cec-Chr8:23624466 3.00E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29380 PF04770 ZF-HD_dimer 9.20E-29 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1544 - - - 0.0