Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1588 ATGGCAGCAGCTATAGATATTTACAGTGGAATTTCGACGCCGGTTTACTCTTCGGATCCTTTTAGCGAGGAATTAATGAAAGCACTTCAACCTTTTATGAAAAGTGCTACCTCAACCTCCTCCTCTTCTTCTCCTTCTCTATCATTGCCTTCTCCTTCTGTTTCTTCTCAGTCTAGACTAAGCCCTGATTTTTGCTCCCCGTCGAGCACCCGCTTGTTTTCTCAAGGGTTCTCGGGAATTGAACAAATGGGTTTTGAGCAATCAGGTCCAATCGGGCTAAACAATCTCACCCCTTCTCAAATTCTCCAAATTCAAGCACAAATTCAACTACCCTCACCAACTATGTCTTCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTCCAGTCCCAATATCGTAACTTCCTTGCCCCTAAATCCTTCCCCATGAAGCACATCGGCTCTCCACCTAAGTCCACTAAACTCTACAGGGGAGTCCGGCAGCGGCACTGGGGAAAATGGGTGGCTGAAATCAGACTCCCTAAGAACCGAACTAGACTCTGGCTTGGGACTTTCGACACGGCCGAGGAGGCTGCTTTGGCCTATGACAAAGCTGCTTACAAGCTCCGCGGGGACTTTGCTAGGCTCAATTTCCCACATCTTAAACACCAATTCGGAGACTTCAAACCTCTTCACCCTTCTGTGGATGCCAAACTTCAAGCAATTTGTCAGGGCTTGAAACAGGGGAAAACAGAGCAGCTCTGTTCTGTTGAGGATGAAAAACCAACGACCAATCCACTTCCATTCGAATCAAACTCAGTGGCTAACAATTTTTGGGAACCAGAATTGAAAAGCGAAGTGGAAACCTCATCTTCGTCTTCATCCTCATCTCCTTCACGGTCTGAAGATTATTCCACTGGATCTTCCCCTGAGTCAAGTATCAGCTTCTTGGATTTTTCAGATTCTCAATGGGGTGAAGGAGTAGAAGCATTTTGTTTGGAAAAGTATCCTTCTGTTGAAATTGATTGGGCAGCTCTGAGTCAGCTGGCCGAATCAGAGTGTTAA 1050 45.62 MAAAIDIYSGISTPVYSSDPFSEELMKALQPFMKSATSTSSSSSPSLSLPSPSVSSQSRLSPDFCSPSSTRLFSQGFSGIEQMGFEQSGPIGLNNLTPSQILQIQAQIQLPSPTMSSFSSSSSSSSSSSFQSQYRNFLAPKSFPMKHIGSPPKSTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHQFGDFKPLHPSVDAKLQAICQGLKQGKTEQLCSVEDEKPTTNPLPFESNSVANNFWEPELKSEVETSSSSSSSSPSRSEDYSTGSSPESSISFLDFSDSQWGEGVEAFCLEKYPSVEIDWAALSQLAESEC 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35308096 35309145 - CePI673135_04g015880.1 Cec04g1588 201070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1588 349 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1588 349 PRINTS Ethylene responsive element binding protein signature 180 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1588 349 FunFam Ethylene-responsive transcription factor 2 156 215 - -
Cec04g1588 349 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677(InterPro)
Cec04g1588 349 Pfam AP2 domain 157 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1588 349 MobiDBLite consensus disorder prediction 34 62 - -
Cec04g1588 349 CDD AP2 156 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1588 349 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1588 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 19 342 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cec04g1588 349 SMART rav1_2 157 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g1588 349 MobiDBLite consensus disorder prediction 280 308 - -
Cec04g1588 349 ProSiteProfiles AP2/ERF domain profile. 157 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1588 Cec-Chr4:35308096 Cec11g1592 Cec-Chr11:30255730 1.40E-61 dispersed
Cec06g0821 Cec-Chr6:10069849 Cec04g1588 Cec-Chr4:35308096 8.30E-29 transposed
Cec04g1588 Cec-Chr4:35308096 Cec08g1260 Cec-Chr8:24584472 2.50E-16 wgd
Cec04g1588 Cec-Chr4:35308096 Cec08g1123 Cec-Chr8:23152688 1.50E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29385 PF00847 AP2 7.90E-15 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1588 K09286 - csv:101211347 543.888