Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1622 ATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGAGCCATTGCTGCTAAGATCTACACTGGTCTCAGAGCTCAGGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAATATGAGTGCCTGTTCTTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCCAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTCGACGGGAATCCATCTTCTTACCTTCTGCCATTCCTTCAAAATATATCCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCGAACAGTGCACCTGTCACACCACCTCTTTCTTCCCCGACGTCAAGGGGTTCGAAGCGAAAGCCAGACTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCCCTCTTTGCTGTCTCTGCTCCATCAAGTCCTACAAGATGCCACCATCTTACACCCGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTTGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTTAGTCAGCAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATAGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACTCTTGGGGGTGGGAAGGCCCGTGGTTAA 960 49.69 MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKARG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35562619 35564132 + CePI673135_04g016220.1 Cec04g1622 201104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1622 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 6 318 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Cec04g1622 319 MobiDBLite consensus disorder prediction 1 25 - -
Cec04g1622 319 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 129 IPR008540 -
Cec04g1622 319 MobiDBLite consensus disorder prediction 155 179 - -
Cec04g1622 319 MobiDBLite consensus disorder prediction 155 171 - -
Cec04g1622 319 MobiDBLite consensus disorder prediction 10 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1622 K14503 - - csv:101216171 579.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0673 Cec-Chr3:7252565 Cec04g1622 Cec-Chr4:35562619 6.20E-56 transposed
Cec07g1113 Cec-Chr7:26331372 Cec04g1622 Cec-Chr4:35562619 4.50E-51 transposed
Cec04g1622 Cec-Chr4:35562619 Cec08g1575 Cec-Chr8:27316678 2.50E-86 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g1575 . 1 310 BZR Transcription Factor Family AT1G75080 59.1 2.9e-85 312.4
Cec04g1622 . 28 319 BZR Transcription Factor Family AT1G75080 59.2 1.3e-80 297.0
Cec08g1575 . 1 311 BZR Transcription Factor Family AT1G19350 58.8 3.8e-85 312.0
Cec04g1622 . 28 317 BZR Transcription Factor Family AT1G19350 59.5 4.5e-78 288.5
Cec04g1622 . 6 319 BZR Transcription Factor Family AT3G50750 57.7 2.4e-77 285.8
Cec08g1575 . 1 305 BZR Transcription Factor Family AT3G50750 51.5 1.0e-59 227.3
Cec07g1113 . 77 325 BZR Transcription Factor Family AT4G18890 54.2 5.5e-50 194.5
Cec03g0673 . 80 327 BZR Transcription Factor Family AT4G18890 51.4 4.4e-47 184.9
Cec07g1113 . 1 325 BZR Transcription Factor Family AT1G78700 73.1 1.3e-117 419.9
Cec03g0673 . 1 327 BZR Transcription Factor Family AT1G78700 67.5 1.1e-102 370.2
Cec04g1622 . 28 200 BZR Transcription Factor Family AT4G36780 79.1 3.8e-64 241.9
Cec08g1575 . 33 204 BZR Transcription Factor Family AT4G36780 61.8 8.3e-43 171.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29386 PF05687 BES1_N 1.70E-64 No_clan Cec TF