Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1633 ATGCCAGCTGATGTAAAAGATTCGTCCATAGCTTCAGGGGAGGCCAGCGTTTCTTCTCCTGGAGCGAAATCTGCCACCAAGAAGAAAAGAAATCTGCCCGGGATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGTCCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAATAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGTCATAATCTTCCGTGGAAGCTCCGGCAGCGGACAAGTAAGGAGGTCAAGAAGAAGGTCTATGTTTGCCCTGAGCCTTCTTGTGTTCATCATGATCCCTCCAGGGCTTTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATCTGTGGCACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAATCTCAGCCTAAGCCACTGGATTCTCAGCCTAAACCGGATTTAGACGCTAACCCTGATGGCGATTCTCAGTCGGCGGCGGTAAAACCGAATCTAAAGCCTTCTCCACCGCCTCTGCCATCATCACCACCGGCTCCATCTCCTCCACAGTCAACTGGTGAGGTAACAACTGTGTTGCCTATTCCTAGTCAAGAGCTGTCGGAGAATCCCTCGCAATGTATCGAAGAGGCGCTGGGTACACCCGGTTTGAGTGGGAGCAGCAGTAGCAGCAAGAGCGCAAGCAGCAATAGCAGTGCGAGAACGAGCGGATTTGCTGGTTTGTTTACTTCCTCGAGTATGTCGACAGGCATTCAACCTCCAAGACCTCCTGCATTTACAGACCTAATGCAAGGCATGGCTTGTACAGATCGCTCATCAGACTATGCACCATCTTCAACCATTGAACCTATTTCTCTATGTCTTGCAATGAATCAAGGGTCATCGATCTTTGGAACTGCCAGCCAAGACCTCCGACAGTACACACCGACGCCATCGCCTGCAATGTCTGCCACGGCATTACTTCAAAAAGCAGCTCAAATGGGCGCGGCAGCATCAAATGCCTCGTTGCTTCGTGGTTTGGGTTTAGTATCATCTTCCCCTTTAGCTGCTCAGCAAGAAAGCTTGCCATGGAACCACCACCACCAGAGGCAAGTCGAACCTGATGGCCTCTCGATTGCTGCAGGGCTCGGACTTGGACTTCCCTGTGATGGAAACTCCGGATTGAAGGAATTAATGAGGGGAAACCATTCCATGTTTGCTCCAAAACATACCACACTCGATTTCCTTGGACTGGGAATGGCAGCTGGTGGCAGCCCCAACAGTGGCCTGGCTGCACTAATTACATCAGTCGGGAGCGGTGTAGATGTCGGCATAACAACCCGATCATACGGTGGTGGTGACATATCCGGCGATGACATGAACAGAAGCAACTGA 1536 50.13 MPADVKDSSIASGEASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKSQPKPLDSQPKPDLDANPDGDSQSAAVKPNLKPSPPPLPSSPPAPSPPQSTGEVTTVLPIPSQELSENPSQCIEEALGTPGLSGSSSSSKSASSNSSARTSGFAGLFTSSSMSTGIQPPRPPAFTDLMQGMACTDRSSDYAPSSTIEPISLCLAMNQGSSIFGTASQDLRQYTPTPSPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSPLAAQQESLPWNHHHQRQVEPDGLSIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDVGITTRSYGGGDISGDDMNRSN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35643273 35645397 - CePI673135_04g016330.1 Cec04g1633 201115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1633 511 MobiDBLite consensus disorder prediction 185 244 - -
Cec04g1633 511 MobiDBLite consensus disorder prediction 11 25 - -
Cec04g1633 511 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cec04g1633 511 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Cec04g1633 511 MobiDBLite consensus disorder prediction 1 39 - -
Cec04g1633 511 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 131 155 - -
Cec04g1633 511 FunFam protein indeterminate-domain 12-like 35 103 - -
Cec04g1633 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Cec04g1633 511 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 158 196 - -
Cec04g1633 511 SMART c2h2final6 132 152 IPR013087 -
Cec04g1633 511 SMART c2h2final6 97 127 IPR013087 -
Cec04g1633 511 SMART c2h2final6 56 78 IPR013087 -
Cec04g1633 511 MobiDBLite consensus disorder prediction 264 289 - -
Cec04g1633 511 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Cec04g1633 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 468 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec04g1633 511 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cec04g1633 511 MobiDBLite consensus disorder prediction 269 289 - -
Cec04g1633 511 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 93 127 - -
Cec04g1633 511 MobiDBLite consensus disorder prediction 219 238 - -
Cec04g1633 511 Gene3D Classic Zinc Finger 36 103 - -
Cec04g1633 511 Gene3D Classic Zinc Finger 110 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1817 Cec-Chr1:32616841 Cec04g1633 Cec-Chr4:35643273 7.40E-60 dispersed
Cec04g1633 Cec-Chr4:35643273 Cec09g0710 Cec-Chr9:6352375 1.50E-88 dispersed
Cec02g1826 Cec-Chr2:36101299 Cec04g1633 Cec-Chr4:35643273 6.90E-12 transposed
Cec03g0227 Cec-Chr3:2458314 Cec04g1633 Cec-Chr4:35643273 2.90E-78 transposed
Cec07g0994 Cec-Chr7:24312143 Cec04g1633 Cec-Chr4:35643273 2.00E-125 transposed
Cec04g1633 Cec-Chr4:35643273 Cec08g1569 Cec-Chr8:27281530 1.80E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29389 PF00096 zf-C2H2 0.0052 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1633 K25869 - csv:101217597 703.36