Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1636 ATGGCTGCAGAAACAGGATTGTTTGCTGTTCAACAGACCATTGGCAGTGTCTTATGTTGCAAATGTGGCATTCCCATGGCACCAAATGCTGCCAATATGTGTGTCAAGTGCTTGTGTTCTGAAGTTGACATCACAGAAGGTTTACAGAAGCAATTGACTATCATGCATTGTCCGGATTGTGAGAGTTACTTGCAGCCACCCCGAACTTGGATTAAAGCGCAATTAGAATCAAAGGAACTACTGACATTCTGTATCAAAAGGTTAAAAAATTTGAATAAAGTTAAACTGGTACATGCTGAATTTGTTTGGACTGAACCCCATTCCAAAAGGATCAAGGTAAAGTTGAAGGTCCAGAAAGAAGTCTTACATGGAGCAATTTTGGAACAGTCGTATGTCGTGGAGTATGTTGTACAAGATCATTTGTGTGAGTCTTGCTCGAGGGTCCAGGCCAACCCTGACCAGTGGGTGGCTTCCGTTCAACTCAGGCAACACGTCCCTCACCGCCGTACATTTTTCTTCTTGGAACAACTGATACTAAAGCATGGTGCTGCTGCCAGTGCCATAAGGATCAAACAGATGGATCAAGGTATTGACTTTTTTTTTTCTAATAGGAGTCATGGTGTAAAGTTTGTGGAATTTATCGGAAAGGTTGCTCCAATTAGGAGCCGCCACGATAAACAACTTGTTTCTCATGATCCTAAGAGTAATATTCACAACCATAAGCACACTTTCTCTGTTGAAATATCCCCAATATGCCGTGAGGATTTGATATGCTTGCCTCCTAAAGTTGCTGTTAGTTTAGGCAATCTTGGTCCTCTTGTGATTTGCACCAAAGTTACAAATGCTATTGCATTACTTGATCCATTCACCTTAAGGCACTGCTTCTTAGATGCTGATCAGTATTGGAGGACATCCTTTAGGTCTCTACTTACTAGCAGGCAACTTGTTGAATATGTTGTATTGGATATAGAGAATGTTTCTACTGAAGTCAATGTTGCTGGTTCCAAGTATATATTGGCCTATGCTCAAGTAGCTCGCTTATCAGATTTTGGAAGGAATGACACAATATTCTCCATAAAAACCCATCTAGGTCATATTTTGAACCCTGGGGATTATGCTCTTGGTTATGATCTTTATGGAGCCAATAGTAATGATATGGAGCTCGAAAAATATAAGGGTCTTGAGCTTCCAGAAGCAATTTTAATCAAGAAGAGTTACGAAGAAAAGCGTCAGAGAAAGCGTGGAAAGCCTCGATCATGGAAGCTTAGATCTCTTGAAATGGATGTTGACGATAAAGGCAAAGCAGATGAAGATAAGACGAACTCCGAGTATGAACAATTTTTGAGAGATCTGGAGGAGAATCCAGATTTGAGGTTCAACATATCATTGTACCGAAATAGAGAATATCAACCATCTGAAATGACTGATGGGGAAGATGGACCTTCAGTACCACTTGAAGAGTTGCTTGCTGATCTTGATTTAAGTGAAGGGGAGGGGGACGATAGCATGAATGAGTAA 1518 40.78 MAAETGLFAVQQTIGSVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDCESYLQPPRTWIKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKEVLHGAILEQSYVVEYVVQDHLCESCSRVQANPDQWVASVQLRQHVPHRRTFFFLEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVAPIRSRHDKQLVSHDPKSNIHNHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYILAYAQVARLSDFGRNDTIFSIKTHLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKRGKPRSWKLRSLEMDVDDKGKADEDKTNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEMTDGEDGPSVPLEELLADLDLSEGEGDDSMNE 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35669975 35671492 + CePI673135_04g016360.1 Cec04g1636 201118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1636 505 Pfam NMD3 SH3 domain 251 294 IPR048899 -
Cec04g1636 505 MobiDBLite consensus disorder prediction 468 505 - -
Cec04g1636 505 MobiDBLite consensus disorder prediction 491 505 - -
Cec04g1636 505 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 8 494 IPR039768 GO:0000055(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0043023(InterPro)|GO:0043023(PANTHER)
Cec04g1636 505 Pfam NMD3 OB-fold domain 315 404 IPR048898 -
Cec04g1636 505 Pfam NMD3 family 19 248 IPR007064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1636 K07562 - - csv:101217835 978.393
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1636 Cec-Chr4:35669975 Cec09g2324 Cec-Chr9:40139458 4.50E-122 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g946 . . . . . . . . . . . Cma07g00497 . Car07g00437 . Cpe19g00803 . Bhi03g01277 . . . Hepe04g1496 . . Cla01g01894 Cam01g1984 Cec04g1636 Cco04g1702 Clacu01g2004 Cmu01g1875 Cre04g1556 . . . . Lsi01g00690 . . Cme08g00834 Blo05g00789 . . . . . . . Sed14g1103 . . . . . . . . Bhi10g02034 Tan05g1329 Cmetu01g1244 . Hepe08g1031 . . . . . . . . . . Csa06g03226 Chy02g00662 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002854 1 3 2 2 1 2 2 2 2 1 2 2 1 1 2 2 2 2 2 2 1 1 2 1 1 2 1 3 2 2 52