Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1642 ATGGCGAATATGTGTGCCGATAGTGGCAATCTTATGGCGATTGCCCAGCAAGTCATGAAGCAGCAGCAACAACAGGAGGAGCAGCAGCAACAGCACCCACAGCAGCTCACTGGACCCTGTACTTTCGGTCTCAACCCATGGAGTGCCTCGAACCATACTCTGTCCGGTGCTCCAGATTTGGGGTTTGGGCTTTCCGGAGCTGGATTTTCCAACCCGTTTCAGGTTCAGAGAGTGGTCGACGTTGGAGAAACGAGCTTTCAGTTTCCGAACTTGGAGAACCATTCCCCTGCTTTCAGATTTTCCGATTTCGACGGCGGTACTGCTGCAGAGTTCGACTCTGATGAGTGGATGGAGAGTCTAATGGTTGGTGGAGATTCAACAGATAGCACGAATCTTCCTTCTGGTTGCGACGTGTGGCAGTCTAATTCGGATTTTGCTTTCTACGGTGCTGATCCCTTTGTCCCCTGTCCTAGTCGCTTCACTATTCCCTGTTCTTCACCCTCTGATCATAACAGAACCATTTTCCCTGACCCGCCCAAAAGTGAACCTGCCGTTGAACCGCCGGTGGTCTCGTGGACGGGGATTCCCCCGGCGACTCCTTCGGTGGTGGTTGAGGACACTCAAGTCCCCAACCCTCCCCTTGCTATTCTCAAGAGTGAAGATAACGGCGGTTCATCGAGTTCTACAGGGACCGAATCGACTCCGCTGCTACTTAAAACCCTAATTGAATGTGCTCGACTTTCTGAATCCGAGCCAGATCGAGCGGCGCAAACGTTGATTAAGCTTAAGGAATCGTTATCAGAGCACGGAGATCCGATGGAGAGGGTCGCCTTTTACTTTCTTGAAGCCCTTTGCTGGAGATTATCACTCCCATCGTATAATCGTTTGATTTCTTGCGAATCCACTTCCGACGATTTCACTCTCTCTTACAAAGCTCTCAACGACGCTTGCCCTTACTCCAAATTCGCCCATTTGACTGCAAATCAAGCTATCCTCGAGAGTACAGATAACGCAAGCAAGATTCACATAATCGACTTCGGGATTACTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGCTCCACCGGAAAACCAACCAGAATTCGGATCTCCGGCATCCCATCTCCGATGCTCGGGAACTGTCCAGCGACGGGTAACCGACTGGCCGAGTTCGCTAAACTTCTGGAACTAAACTTCGAATTCGATCCAATTCTCACTCCAATTGAAGAACTGAACGTATCATCCTTCCGAATCGACACTGACGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAACCTCCTCGCGCCGTTCTCAAAGTTCTGCAACTAGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCGAGTCTAAACCGGGTCGGATTCTTCAACCGGTTCAAAAACGCCCTTAGATACTACTCAGCCGTGTTCGAATCGCTGGACCCAAAACTACCTCGCGACTCAAAGGAGAGACTACAACTGGAAAAGCTGGTACTCGGCCGGCAAATCGGCGGCCTAGTTGGACCGGAATCATCGCCGGGAGCGAAAACCGATCGAATGGAAGACAAAGAAGAGTGGAAAATGTTAATGGAAAATTGCGGATTCGAGTCATTTCTTCATGGCGTTGATAGCAGCGGCTTCAAAGTCTCAGAAGCAAATATGATCAACGCAATCAGATTCGGCCGTACTCCACCGCCGATTTTGCTCACATCACCTCTTCCGCCGCAGCTCCGCCGTATTTGCTCTCCTGAGCTCCGATCCCGTCAAGCAATTGGTTTTGCCACTGCACCTGAACAGAACCAAAAGGACATGGATGACTCTCAGAAGAATCCCAAGGAGACTGGAAATATAATGTCTGATTCCTTCGGCGAAGGGTACTCAACTCGAAGCGATGAAGAAGGATTTGGAGGAACTTATGGAGGGAATCAGTCAATCGATGACGACTCAGAGAATAAAAAATCGTTTCTCCACGGGAATCAACATGAAGAATATGATAGAAGCCAAGGGAGCGAAGTGAAGGAGAAGGAGAAGTCACGCCATCAGCCTCATGCAAATTGA 2100 49.81 MANMCADSGNLMAIAQQVMKQQQQQEEQQQQHPQQLTGPCTFGLNPWSASNHTLSGAPDLGFGLSGAGFSNPFQVQRVVDVGETSFQFPNLENHSPAFRFSDFDGGTAAEFDSDEWMESLMVGGDSTDSTNLPSGCDVWQSNSDFAFYGADPFVPCPSRFTIPCSSPSDHNRTIFPDPPKSEPAVEPPVVSWTGIPPATPSVVVEDTQVPNPPLAILKSEDNGGSSSSTGTESTPLLLKTLIECARLSESEPDRAAQTLIKLKESLSEHGDPMERVAFYFLEALCWRLSLPSYNRLISCESTSDDFTLSYKALNDACPYSKFAHLTANQAILESTDNASKIHIIDFGITQGVQWAALLQALATRSTGKPTRIRISGIPSPMLGNCPATGNRLAEFAKLLELNFEFDPILTPIEELNVSSFRIDTDETLAVNFMLQLYNLLDEPPRAVLKVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRDSKERLQLEKLVLGRQIGGLVGPESSPGAKTDRMEDKEEWKMLMENCGFESFLHGVDSSGFKVSEANMINAIRFGRTPPPILLTSPLPPQLRRICSPELRSRQAIGFATAPEQNQKDMDDSQKNPKETGNIMSDSFGEGYSTRSDEEGFGGTYGGNQSIDDDSENKKSFLHGNQHEEYDRSQGSEVKEKEKSRHQPHAN 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35705724 35710746 + CePI673135_04g016420.1 Cec04g1642 201124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1642 699 ProSiteProfiles GRAS family profile. 228 606 IPR005202 -
Cec04g1642 699 MobiDBLite consensus disorder prediction 660 699 - -
Cec04g1642 699 MobiDBLite consensus disorder prediction 607 699 - -
Cec04g1642 699 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 232 551 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cec04g1642 699 Coils Coil 11 31 - -
Cec04g1642 699 Pfam GRAS domain family 238 552 IPR005202 -
Cec04g1642 699 MobiDBLite consensus disorder prediction 625 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1642 Cec-Chr4:35705724 Cec07g1011 Cec-Chr7:24661846 4.70E-162 dispersed
Cec04g1642 Cec-Chr4:35705724 Cec10g2124 Cec-Chr10:35838549 4.90E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29390 PF03514 GRAS 4.50E-94 CL0063 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1642 - - - 0.0