Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1655 ATGGAGACGAGAGGTGAAGATGAGGAAATAGGAACTCCTAATTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATAATCCATTTCTAACAACAGCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCACCACAAACTGAATCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCCGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCATCTGCTATCACTCCGCCGCTGCCAATTGCCAGCAGTAGACTGATCTCAAGAACACCACCATTTCCAGGTGCAACGGGCAACAGTATTCCTTCATCGGTAATTCGATACCGAGAATGTCTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCTAATGGAGAAGATGGAACGCCTGAGGCCTTGAAGTGTGCCGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCACCCTCGCAGCAAGCTTTACCCAGTGGTTTCTTCATCTCCAACTCCATCAGAAACAATGGCCACCGCACTGATAGGACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCAATGATGATGGCATTTGGTGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCAAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAACAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTACGGAGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAGATGTAA 1008 47.62 METRGEDEEIGTPNSPLCYNNPSSNRESSTKLPNSDNPFLTTAADRRRDHTVPQLHFSHHHKLNLHHIHKQHTRDHPEATPDPPIQPSISASPPSAITPPLPIASSRLISRTPPFPGATGNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPPSQQALPSGFFISNSIRNNGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLTKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35792764 35793771 + CePI673135_04g016550.1 Cec04g1655 201137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1655 335 FunFam Zinc-finger homeodomain protein 2 261 332 - -
Cec04g1655 335 Pfam ZF-HD protein dimerisation region 128 180 IPR006456 -
Cec04g1655 335 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 129 180 IPR006456 -
Cec04g1655 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 91 329 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cec04g1655 335 MobiDBLite consensus disorder prediction 14 41 - -
Cec04g1655 335 SUPERFAMILY Homeodomain-like 267 332 IPR009057 -
Cec04g1655 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 130 179 IPR006456 -
Cec04g1655 335 Gene3D - 260 332 - -
Cec04g1655 335 MobiDBLite consensus disorder prediction 65 95 - -
Cec04g1655 335 MobiDBLite consensus disorder prediction 80 95 - -
Cec04g1655 335 MobiDBLite consensus disorder prediction 1 41 - -
Cec04g1655 335 NCBIfam homeobox domain, ZF-HD class 271 328 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1655 Cec-Chr4:35792764 Cec08g1176 Cec-Chr8:23624466 1.20E-41 dispersed
Cec04g1655 Cec-Chr4:35792764 Cec07g0928 Cec-Chr7:23006035 2.00E-46 wgd
Cec04g1655 Cec-Chr4:35792764 Cec08g1547 Cec-Chr8:27126900 1.30E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29392 PF04770 ZF-HD_dimer 9.90E-31 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1655 - - - 0.0