Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1658 ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAGTTGCTTCTGGACATAATACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTTCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCTGCTTGTAACTACACTGTAGGGGCAATTTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCAATCCCGGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACCTCATTCTCGTCCTGTCTCGATAGCCATCACCACCCCCCTTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTCAGTTCCACAAGTATCACTGTGGCACCAATTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTCGTGGCCGATGTTGATCCAGCCCTCGACGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1242 45.65 MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYFGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTVGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLDSHHHPPLPASKGKEPDIDFSSTSITVAPIQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35803965 35805961 - CePI673135_04g016580.1 Cec04g1658 201140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1658 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Cec04g1658 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cec04g1658 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cec04g1658 413 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cec04g1658 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cec04g1658 413 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cec04g1658 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cec04g1658 413 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cec04g1658 413 Pfam F-box domain 55 97 IPR001810 GO:0005515(InterPro)
Cec04g1658 413 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515(InterPro)
Cec04g1658 413 MobiDBLite consensus disorder prediction 22 46 - -
Cec04g1658 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cec04g1658 413 Gene3D - 48 101 - -
Cec04g1658 413 Gene3D Tubby Protein; Chain A 113 413 IPR025659 -
Cec04g1658 413 Pfam Tub family 116 408 IPR000007 -
Cec04g1658 413 MobiDBLite consensus disorder prediction 278 300 - -
Cec04g1658 413 SUPERFAMILY Tubby C-terminal domain-like 104 413 IPR025659 -
Cec04g1658 413 PANTHER TUBBY-RELATED 46 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1658 K19600 - - csv:101221704 785.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1658 Cec-Chr4:35803965 Cec05g1168 Cec-Chr5:10603970 3.80E-119 dispersed
Cec04g1658 Cec-Chr4:35803965 Cec05g2076 Cec-Chr5:32637920 2.40E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g987 . Blo16g00048 . . . . . . . . . Cma07g00481 . Car07g00424 . Cpe19g00814 . Bhi03g01306 . . . Hepe04g1521 . . Cla01g01915 Cam01g2002 Cec04g1658 Cco04g1720 Clacu01g2022 Cmu01g1898 Cre04g1574 . . Cone6ag1629 Cone9ag1554 Lsi01g00669 . Chy07g01239 Cme08g00854 . . Bda11g01863 . . . . . . . Cmo07g00480 . . . . . . . . . . . . . . . . . . . . Lsi07g00258 Csa06g03246 Chy02g00642 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g0347 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 2.3e-178 622.1
Cec05g1168 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.6e-169 592.0
Cec08g0729 . 1 432 TUB Transcription Factor Family AT1G76900 69.4 3.7e-168 588.2
Cec05g0683 . 13 387 TUB Transcription Factor Family AT1G76900 50.9 4.6e-110 395.2
Cec05g1168 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.0e-102 367.1
Cec08g0729 . 175 432 TUB Transcription Factor Family AT1G25280 71.2 2.7e-94 342.0
Cec08g0347 . 173 431 TUB Transcription Factor Family AT1G25280 67.3 1.4e-93 339.7
Cec05g0683 . 154 387 TUB Transcription Factor Family AT1G25280 53.2 5.2e-69 258.1
Cec05g2076 . 289 516 TUB Transcription Factor Family AT1G25280 53.4 5.4e-66 248.1
Cec04g1658 . 176 413 TUB Transcription Factor Family AT1G25280 51.7 5.0e-64 241.5
Cec06g0545 . 154 362 TUB Transcription Factor Family AT1G25280 50.6 1.1e-53 207.2
Cec05g0683 . 98 387 TUB Transcription Factor Family AT5G18680 61.7 1.4e-94 343.2
Cec06g0545 . 98 362 TUB Transcription Factor Family AT5G18680 61.4 2.8e-87 318.9
Cec08g0729 . 112 432 TUB Transcription Factor Family AT5G18680 51.5 3.7e-84 308.5
Cec08g0347 . 112 431 TUB Transcription Factor Family AT5G18680 52.5 1.1e-83 307.0
Cec05g1168 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.2e-83 303.9
Cec05g2076 . 225 516 TUB Transcription Factor Family AT5G18680 52.2 6.8e-78 287.7
Cec07g1124 . 117 383 TUB Transcription Factor Family AT5G18680 50.3 9.3e-67 250.8
Cec04g1658 . 1 413 TUB Transcription Factor Family AT2G18280 61.5 1.4e-139 493.0
Cec05g2076 . 111 516 TUB Transcription Factor Family AT2G18280 59.0 9.9e-125 443.7
Cec05g1168 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 4.7e-119 424.9
Cec08g0347 . 1 431 TUB Transcription Factor Family AT2G18280 51.7 8.4e-116 414.1
Cec05g0683 . 1 387 TUB Transcription Factor Family AT2G18280 53.8 7.1e-115 411.0
Cec08g0729 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 3.9e-113 405.2
Cec06g0545 . 1 362 TUB Transcription Factor Family AT2G18280 51.6 4.9e-100 361.7
Cec05g0683 . 1 387 TUB Transcription Factor Family AT2G47900 68.2 1.4e-158 556.2
Cec06g0545 . 1 362 TUB Transcription Factor Family AT2G47900 66.5 3.0e-145 511.9
Cec08g0347 . 1 431 TUB Transcription Factor Family AT2G47900 55.1 3.9e-132 468.4
Cec05g1168 . 1 428 TUB Transcription Factor Family AT2G47900 56.2 9.5e-131 463.8
Cec08g0729 . 1 432 TUB Transcription Factor Family AT2G47900 56.1 6.2e-130 461.1
Cec05g2076 . 120 516 TUB Transcription Factor Family AT2G47900 55.4 4.6e-117 418.3
Cec04g1658 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 1.2e-114 410.2
Cec07g1124 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 3.9e-100 362.1
Cec09g0343 . 82 297 TUB Transcription Factor Family AT1G16070 61.4 6.5e-73 271.2
Cec08g0347 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.3e-147 519.6
Cec05g1168 . 66 428 TUB Transcription Factor Family AT1G43640 68.3 8.5e-147 516.9
Cec08g0729 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 1.4e-141 499.6
Cec05g0683 . 49 387 TUB Transcription Factor Family AT1G43640 52.6 3.4e-103 372.1
Cec05g2076 . 178 516 TUB Transcription Factor Family AT1G43640 50.1 1.0e-99 360.5
Cec06g0545 . 49 362 TUB Transcription Factor Family AT1G43640 51.0 1.1e-93 340.5
Cec05g2076 . 144 516 TUB Transcription Factor Family AT1G47270 63.9 8.8e-134 473.8
Cec04g1658 . 33 413 TUB Transcription Factor Family AT1G47270 56.7 7.7e-122 434.1
Cec05g1168 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Cec08g0729 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 5.5e-112 401.4
Cec08g0347 . 30 431 TUB Transcription Factor Family AT1G47270 51.3 7.2e-112 401.0
Cec07g1124 . 50 383 TUB Transcription Factor Family AT1G53320 78.0 3.3e-154 541.6
Cec05g0683 . 98 387 TUB Transcription Factor Family AT3G06380 62.8 7.8e-95 344.0
Cec06g0545 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 3.4e-82 302.0
Cec05g1168 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.4e-82 301.6
Cec08g0729 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 4.9e-81 298.1
Cec05g2076 . 229 516 TUB Transcription Factor Family AT3G06380 52.9 6.0e-79 291.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29393 PF01167 Tub 3.80E-102 CL0395 Cec TF