Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1658 ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAGTTGCTTCTGGACATAATACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTTCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCTGCTTGTAACTACACTGTAGGGGCAATTTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCAATCCCGGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACCTCATTCTCGTCCTGTCTCGATAGCCATCACCACCCCCCTTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTCAGTTCCACAAGTATCACTGTGGCACCAATTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTCGTGGCCGATGTTGATCCAGCCCTCGACGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1242 45.65 MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYFGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTVGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLDSHHHPPLPASKGKEPDIDFSSTSITVAPIQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35803965 35805961 - CePI673135_04g016580.1 Cec04g1658 201140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1658 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Cec04g1658 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cec04g1658 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cec04g1658 413 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cec04g1658 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cec04g1658 413 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cec04g1658 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cec04g1658 413 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cec04g1658 413 Pfam F-box domain 55 97 IPR001810 GO:0005515(InterPro)
Cec04g1658 413 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515(InterPro)
Cec04g1658 413 MobiDBLite consensus disorder prediction 22 46 - -
Cec04g1658 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cec04g1658 413 Gene3D - 48 101 - -
Cec04g1658 413 Gene3D Tubby Protein; Chain A 113 413 IPR025659 -
Cec04g1658 413 Pfam Tub family 116 408 IPR000007 -
Cec04g1658 413 MobiDBLite consensus disorder prediction 278 300 - -
Cec04g1658 413 SUPERFAMILY Tubby C-terminal domain-like 104 413 IPR025659 -
Cec04g1658 413 PANTHER TUBBY-RELATED 46 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1658 Cec-Chr4:35803965 Cec05g1168 Cec-Chr5:10603970 3.80E-119 dispersed
Cec04g1658 Cec-Chr4:35803965 Cec05g2076 Cec-Chr5:32637920 2.40E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29393 PF01167 Tub 3.80E-102 CL0395 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1658 K19600 - csv:101221704 785.408