Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1660 ATGTCGTCGTCGGTCGACGTTATATCTCCCGCCTGCACGTCTAATAACAAACTCAGATCGGCGAAGATGAACGATTTAATGACGAAATCATTCTTAAGTTATGTGGTATTAAAGAAACAGGCACAGAGGGATGCCGTAGGCGGCGGCGGCGACGGCTTCGACATTGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGATGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACTCACAACGCCAAAATCCTCCGCGGAATAAGAGACAGAATCGACTCCGACATGGTATCAATCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCAAACCGCCTGATCTCCGTCGCGTACGGCGAAGGAACCGCTGTGGACCGGACAAGAACTTCAGTCACGAACGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTTCAGAGATTGAGAGAAAAAGTTGTGGAGGATCACAAGGAGGATCTGAGAAGAAGATATTTTGGTGCAAATGGGGAACAACCCAGTGACGAACAAGTGGAGAAGATTATGTATGGGAGTTTGAAATTGGAAACGTTTGAAGGGAAATTGAGCGAGACCGAGTTAGGGGACCGAGTCAGGCACGAATCAGTGATGGATATACAGAGGAGTTTGAATAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGATGGAGGACATTGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTCATTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTGTTATATTGCTTGTTTGCATTGTTTCAATGTTGGTTTGTTGA 984 45.12 MSSSVDVISPACTSNNKLRSAKMNDLMTKSFLSYVVLKKQAQRDAVGGGGDGFDIESGGQELNPTEEQNLSLFFEQVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGIRDRIDSDMVSILRRARILKEKLASLDQSNTANRLISVAYGEGTAVDRTRTSVTNGLRVKLREMMNEFQRLREKVVEDHKEDLRRRYFGANGEQPSDEQVEKIMYGSLKLETFEGKLSETELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKMEDIEENVAKAGKFINGGTRSLHYANQMKRKNKKWVYWVWAIIFVILLVCIVSMLVC 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35814281 35815553 - CePI673135_04g016600.1 Cec04g1660 201142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1660 327 Coils Coil 166 193 - -
Cec04g1660 327 SMART tSNARE_6 228 295 IPR000727 -
Cec04g1660 327 CDD SynN 73 215 IPR006011 GO:0016020(InterPro)
Cec04g1660 327 Pfam Syntaxin 73 268 IPR006011 GO:0016020(InterPro)
Cec04g1660 327 Gene3D - 65 196 - -
Cec04g1660 327 Gene3D - 228 326 - -
Cec04g1660 327 Coils Coil 77 97 - -
Cec04g1660 327 SMART SynN_4 65 192 IPR006011 GO:0016020(InterPro)
Cec04g1660 327 FunFam Syntaxin 132 226 326 - -
Cec04g1660 327 CDD SNARE_syntaxin1-like 239 292 - -
Cec04g1660 327 PANTHER SYNTAXIN 73 316 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cec04g1660 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 239 295 IPR000727 -
Cec04g1660 327 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 67 198 - -
Cec04g1660 327 SUPERFAMILY t-snare proteins 69 288 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1193 Cec-Chr4:31507906 Cec04g1660 Cec-Chr4:35814281 3.80E-44 dispersed
Cec04g1660 Cec-Chr4:35814281 Cec10g1365 Cec-Chr10:27908105 2.30E-34 dispersed
Cec04g1660 Cec-Chr4:35814281 Cec10g1837 Cec-Chr10:33175462 1.80E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1660 K08486 - csv:101217836 539.65