Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1677 ATGCAGCAGTCCACCGAAGCAAAGGAGTTGTTTATGAGGAGCAAGAATGTTGGAGGAATTCCTGGTTACTTGGGGTTACCTTTTGTAGGGGAAACCTTCTCTTTTCTTTCTGCTAATAACAGTACCAAAGGGTGTTACCACTTTGTCAGGCTCCGCAGGTTGTGGCATGGAAGATGGTTCAAGACAAGGCTATTCGGAAAGATACACGTGTTTGTTCCAAGTGCAGAAGGAGCAAAAGCAATATTTGCCAATGATTTTGTCCAATTCAACAAGGGATACGTGAAATCCATGGGAGATGCTGTTGGAGAGAAGAGTTTACTATGTGTTTCCCATGAGAATCACAGAAGGATTAGACGTCTTCTAGCAGATCCCTTCTCCATGACTTCTCTGTCTAAGTTTGTCAAAGAATTTGACGACATGCTCTCCAAAAGGCTAAAGAAACTAGTAAAAGATGGGAAAAGTTTTGTACTGCTTGATTTTAGCATGAAGATAACATTCGATTCCATGTGCAATATGCTAATGAGTCTAAGAGATGAATCTACACTCAGACAGATTGAGAAAGACTGTACAGCTGTCTCTGATGCCATGTTATCTTTCCCATTCATGATTCCAGGAACTAGATACTACAAAGGCATCAAGGCACGAAACCGACTCATGGAAAGATTTAGAGAGATAATTTCCCGACGGCGGAGGGGAGAGGAGTCACCAGAAGACTTCCTACAGTCGATGTTGCGGAGAGATTCATATCCTTCAAATGAAAAGCTGGATGACTCAGAGATAATGGATAACCTATTGACACTGATAATTGCAGGCCAAACCACCACAGCTGCTGCTATGATGTGGAGTATCAAATTCCTGGACGAGAACAGAGAGGCCCAAGAAAGGCTACGGGAAGAACAATTGTCAATTCTAGGAAAGAAGGAACATGGAGAATTGCTTACCCTTGAAGATCTTAACAAAATGTCATACGGTTCAAAGGTTGTCAAAGAGACGTTGAGAATGTCCAATGTTTTGCTGTGGTTTCCTCGTGTGGCACTAGGAGATTGCAGATTAGAAGGCACGTTTCTCCTAGGGAACAAGGAACCCCATCCAACTCATTTTGCACGTGACATGCAGGAAATTCAAAAGCCATACAGTTTCATACCTTTTGGATCTGGGCCCAGGACCTGTCTTGGAATTAACATGGCCAAATTAACAATGTTGGTCTTCTTGCACAGAATGACTGGAGGGTACAAGTGGACGGTTGATGATCCAGATCCTTGCCTTGAAAAGAAGGCACACATCCCTAGACTGAGAAGCGGCTGCCCCATTACTTTGAAGACCTTAAAAAGAATTGGAAAAACTAAGAGGTCGTTTCTATTGATGAGGCACGGAAAGTATGGGGGCCTCACAATTCTAAGCCTAGAATCTCCGGACACCCTTCTCATTGCCACCTCCAGTCACCATAACACCCTTCTCATTGACATCCATCGGCATTGA 1479 43.48 MQQSTEAKELFMRSKNVGGIPGYLGLPFVGETFSFLSANNSTKGCYHFVRLRRLWHGRWFKTRLFGKIHVFVPSAEGAKAIFANDFVQFNKGYVKSMGDAVGEKSLLCVSHENHRRIRRLLADPFSMTSLSKFVKEFDDMLSKRLKKLVKDGKSFVLLDFSMKITFDSMCNMLMSLRDESTLRQIEKDCTAVSDAMLSFPFMIPGTRYYKGIKARNRLMERFREIISRRRRGEESPEDFLQSMLRRDSYPSNEKLDDSEIMDNLLTLIIAGQTTTAAAMMWSIKFLDENREAQERLREEQLSILGKKEHGELLTLEDLNKMSYGSKVVKETLRMSNVLLWFPRVALGDCRLEGTFLLGNKEPHPTHFARDMQEIQKPYSFIPFGSGPRTCLGINMAKLTMLVFLHRMTGGYKWTVDDPDPCLEKKAHIPRLRSGCPITLKTLKRIGKTKRSFLLMRHGKYGGLTILSLESPDTLLIATSSHHNTLLIDIHRH 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35932850 35937708 - CePI673135_04g016770.1 Cec04g1677 201159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1677 492 Gene3D Cytochrome P450 11 443 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cec04g1677 492 PRINTS P450 superfamily signature 390 401 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cec04g1677 492 PRINTS P450 superfamily signature 270 287 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cec04g1677 492 PRINTS P450 superfamily signature 326 337 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cec04g1677 492 PRINTS P450 superfamily signature 381 390 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cec04g1677 492 PANTHER CYTOCHROME P450 26 21 411 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
Cec04g1677 492 PRINTS E-class P450 group I signature 390 413 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cec04g1677 492 PRINTS E-class P450 group I signature 380 390 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cec04g1677 492 PRINTS E-class P450 group I signature 259 276 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cec04g1677 492 PRINTS E-class P450 group I signature 279 305 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cec04g1677 492 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 383 392 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cec04g1677 492 Pfam Cytochrome P450 363 423 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cec04g1677 492 Pfam Cytochrome P450 25 355 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cec04g1677 492 SUPERFAMILY Cytochrome P450 13 440 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1677 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1677 Cec-Chr4:35932850 Cec09g0961 Cec-Chr9:9152470 2.70E-63 dispersed
Cec04g1677 Cec-Chr4:35932850 Cec08g1531 Cec-Chr8:27015429 1.90E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1026 . . . . . . . . . . Cma03g00726 . Car03g00664 . Sed11g1049 . Cpe10g00632 Bhi03g00926 Tan03g2013 Cmetu03g0864 . Hepe04g1544 . . Cla01g01935 Cam01g2019 Cec04g1677 Cco04g1741 Clacu01g2040 Cmu01g1916 Cre04g1592 . . . . Lsi01g00654 . . Cme08g00877 . . . . . . . . . Cmo03g00751 . . . . . . . . . . . . . . . . . . . . . . Csa06g03271 Chy02g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013553 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 26