Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1699 ATGTCTGGCTTTTTCACTTTAGGAGGCGGCGGAGGAGGAGGAGGAGGAAGAGAAGAGCACCAAGAAAACCAACAAAACAACCGCCCCAACGAAATTATTCCCCCGGATAGCAGCTTGTTTTGGTATAAGGGCAACGTGGAGGTATGGCAGCAGCAGCAGCAGCAGCAGCAGCATCATCATCATCATCATCATCATCATCATCATCAAGAACAAGCTCTCTTCCAAACCCAATCCCGGACTACTCCTTACTCCGCTCCTCTAGGCGTCCGGAGCTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGCTCAGGATCCGGTGGAGGTGGAATCAGCTGCCAAGACTGCGGCAACCAAGCGAAGAAAGATTGCAGCCATATGCGGTGCAGAACTTGTTGCAAGAGCCGAGGATTCCATTGTGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGCGAGCGCCAAGACAAACTCGCTGCCTTACAAAGCCATCATCAACATCAACTTCATCTCCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCTTCCTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCAGCCGAGTTAAACTCTCCGGCTGTTTTCCGTTGCGTTCGCGTCAGCTCTACCGACGATACTGACGACCAATACGCGTATCAAACGGCGGTAAATATCGGAGGACATGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGCTGAGACTTCATCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCGCTGGTGCCGCTGATGCCACCGCAAGCGGTGGTTCCACCGCCGCATTACCCTTGATGGATCCTTCTTCTTTGTATTCAACGCCACTCAATAGCTTCATGGCGGGTACGCAATTCTTCCCACCACCAAGATCTTAA 1005 50.35 MSGFFTLGGGGGGGGGREEHQENQQNNRPNEIIPPDSSLFWYKGNVEVWQQQQQQQQHHHHHHHHHHHQEQALFQTQSRTTPYSAPLGVRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPAETSSGGGGSSSGVQPLNFIAGAADATASGGSTAALPLMDPSSLYSTPLNSFMAGTQFFPPPRS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36110252 36111476 - CePI673135_04g016990.1 Cec04g1699 201181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1699 334 MobiDBLite consensus disorder prediction 1 37 - -
Cec04g1699 334 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 328 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cec04g1699 334 MobiDBLite consensus disorder prediction 50 106 - -
Cec04g1699 334 NCBIfam putative zinc finger domain, LRP1 type 115 157 IPR006510 -
Cec04g1699 334 MobiDBLite consensus disorder prediction 172 193 - -
Cec04g1699 334 NCBIfam LRP1 C-terminal domain 216 263 IPR006511 -
Cec04g1699 334 MobiDBLite consensus disorder prediction 172 187 - -
Cec04g1699 334 Pfam Domain of unknown function (DUF702) 113 264 - -
Cec04g1699 334 MobiDBLite consensus disorder prediction 73 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2405 Cec-Chr2:41246012 Cec04g1699 Cec-Chr4:36110252 6.70E-35 dispersed
Cec04g1699 Cec-Chr4:36110252 Cec09g1445 Cec-Chr9:21478132 5.50E-52 dispersed
Cec04g1699 Cec-Chr4:36110252 Cec05g2046 Cec-Chr5:32372190 1.10E-52 wgd
Cec04g1699 Cec-Chr4:36110252 Cec07g0963 Cec-Chr7:23622224 1.10E-52 wgd
Cec04g1699 Cec-Chr4:36110252 Cec08g1505 Cec-Chr8:26771563 5.50E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29395 PF05142 DUF702 1.10E-66 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1699 K27807 - csv:101207689 493.426