Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1704 ATGGAAGCTGCGTTGAAGATGGGTCTCATGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTCAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTCGAATTTAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCCGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGGGCCGCGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCGGGGCGGCTTTTTCCCGAATACAGACCGGCTTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGACCCGGCCCTGTAG 903 50.39 MEAALKMGLMKEMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEEEEEEEAEGEEKNNHSSVSAPLQLQQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQGPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLDPAL 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36142721 36143623 + CePI673135_04g017040.1 Cec04g1704 201186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1704 300 Coils Coil 44 73 - -
Cec04g1704 300 MobiDBLite consensus disorder prediction 152 183 - -
Cec04g1704 300 MobiDBLite consensus disorder prediction 195 223 - -
Cec04g1704 300 PIRSF Txn_fac_GATA_plant 10 297 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cec04g1704 300 MobiDBLite consensus disorder prediction 46 104 - -
Cec04g1704 300 MobiDBLite consensus disorder prediction 72 104 - -
Cec04g1704 300 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1704 300 Gene3D - 213 292 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cec04g1704 300 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1704 300 FunFam GATA transcription factor 211 295 - -
Cec04g1704 300 CDD ZnF_GATA 221 269 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1704 300 ProSiteProfiles GATA-type zinc finger domain profile. 216 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1704 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 278 - -
Cec04g1704 300 MobiDBLite consensus disorder prediction 50 67 - -
Cec04g1704 300 SMART GATA_3 216 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1704 300 PANTHER GATA TRANSCRIPTION FACTOR 43 288 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1704 Cec-Chr4:36142721 Cec07g0974 Cec-Chr7:24003364 1.40E-51 dispersed
Cec04g1704 Cec-Chr4:36142721 Cec09g0008 Cec-Chr9:80815 6.70E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29396 PF00320 GATA 1.20E-16 CL0167 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1704 - - - 0.0