Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1704 ATGGAAGCTGCGTTGAAGATGGGTCTCATGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTCAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTCGAATTTAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCCGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGGGCCGCGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCGGGGCGGCTTTTTCCCGAATACAGACCGGCTTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGACCCGGCCCTGTAG 903 50.39 MEAALKMGLMKEMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEEEEEEEAEGEEKNNHSSVSAPLQLQQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQGPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLDPAL 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36142721 36143623 + CePI673135_04g017040.1 Cec04g1704 201186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1704 300 Coils Coil 44 73 - -
Cec04g1704 300 MobiDBLite consensus disorder prediction 152 183 - -
Cec04g1704 300 MobiDBLite consensus disorder prediction 195 223 - -
Cec04g1704 300 PIRSF Txn_fac_GATA_plant 10 297 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cec04g1704 300 MobiDBLite consensus disorder prediction 46 104 - -
Cec04g1704 300 MobiDBLite consensus disorder prediction 72 104 - -
Cec04g1704 300 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1704 300 Gene3D - 213 292 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cec04g1704 300 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1704 300 FunFam GATA transcription factor 211 295 - -
Cec04g1704 300 CDD ZnF_GATA 221 269 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1704 300 ProSiteProfiles GATA-type zinc finger domain profile. 216 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1704 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 278 - -
Cec04g1704 300 MobiDBLite consensus disorder prediction 50 67 - -
Cec04g1704 300 SMART GATA_3 216 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1704 300 PANTHER GATA TRANSCRIPTION FACTOR 43 288 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1704 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1704 Cec-Chr4:36142721 Cec07g0974 Cec-Chr7:24003364 1.40E-51 dispersed
Cec04g1704 Cec-Chr4:36142721 Cec09g0008 Cec-Chr9:80815 6.70E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g1249 . 85 351 C2C2-Gata Transcription Factor Family AT5G25830 54.0 7.9e-67 251.1
Cec07g1441 . 96 287 C2C2-Gata Transcription Factor Family AT3G60530 50.5 6.2e-45 177.9
Cec04g1704 . 111 287 C2C2-Gata Transcription Factor Family AT4G36240 50.3 1.8e-41 166.4
Cec10g0229 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.9 1.6e-138 490.0
Cec09g1299 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 4.7e-135 478.4
Cec10g0229 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 51.0 3.9e-120 428.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29396 PF00320 GATA 1.20E-16 CL0167 Cec TF