Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1710 ATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCAGACGAGGCTGCTCTTTGTGCAATTTGTGATACAAAGGTACACATGTGCAATAAGCTTGCGAGCCGTCATGTAAGGGTTGGGCTAGCAAATCCAAGTGAAGTTCCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGACAGTTGAGTTTCCAGGGGATAAATTAGAAAATGATGTGAAGGACCTAAATGCAAAACCAATGGAACAGGTTGAGAAAGTGAGAAGCCAAAATGAAGAAAGGGGTGAGATTGGGAAGCACGAAGAGTTGAGGGTTTCAGTTGTTAAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGACCTAATAAAGTGATTGATTTGAACATGTAA 510 41.18 MRILCDSCESAAATLFCAADEAALCAICDTKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQTVEFPGDKLENDVKDLNAKPMEQVEKVRSQNEERGEIGKHEELRVSVVKKDYSNGDGHSKRPNKVIDLNM 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36182194 36183203 - CePI673135_04g017100.1 Cec04g1710 201192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1710 169 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cec04g1710 169 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cec04g1710 169 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Cec04g1710 169 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 132 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cec04g1710 169 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270(InterPro)
Cec04g1710 169 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cec04g1710 169 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Cec04g1710 169 FunFam B-box zinc finger protein 19 2 92 - -
Cec04g1710 169 Gene3D Classic Zinc Finger 1 94 - -
Cec04g1710 169 MobiDBLite consensus disorder prediction 149 169 - -
Cec04g1710 169 CDD Bbox1_BBX-like 4 47 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1710 Cec-Chr4:36182194 Cec07g1108 Cec-Chr7:26281393 6.30E-20 dispersed
Cec07g0908 Cec-Chr7:22562950 Cec04g1710 Cec-Chr4:36182194 3.90E-55 transposed
Cec04g1710 Cec-Chr4:36182194 Cec08g1502 Cec-Chr8:26751415 2.60E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29398 PF00643 zf-B_box 2.80E-06 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1710 - - - 0.0