Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g1710 | ATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCAGACGAGGCTGCTCTTTGTGCAATTTGTGATACAAAGGTACACATGTGCAATAAGCTTGCGAGCCGTCATGTAAGGGTTGGGCTAGCAAATCCAAGTGAAGTTCCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGACAGTTGAGTTTCCAGGGGATAAATTAGAAAATGATGTGAAGGACCTAAATGCAAAACCAATGGAACAGGTTGAGAAAGTGAGAAGCCAAAATGAAGAAAGGGGTGAGATTGGGAAGCACGAAGAGTTGAGGGTTTCAGTTGTTAAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGACCTAATAAAGTGATTGATTTGAACATGTAA | 510 | 41.18 | MRILCDSCESAAATLFCAADEAALCAICDTKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQTVEFPGDKLENDVKDLNAKPMEQVEKVRSQNEERGEIGKHEELRVSVVKKDYSNGDGHSKRPNKVIDLNM | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 36182194 | 36183203 | - | CePI673135_04g017100.1 | Cec04g1710 | 201192 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g1710 | 169 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Cec04g1710 | 169 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
Cec04g1710 | 169 | SMART | bboxneu5 | 51 | 96 | IPR000315 | GO:0008270(InterPro) | |
Cec04g1710 | 169 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 132 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
Cec04g1710 | 169 | ProSiteProfiles | Zinc finger B-box type profile. | 51 | 97 | IPR000315 | GO:0008270(InterPro) | |
Cec04g1710 | 169 | Pfam | B-box zinc finger | 4 | 42 | IPR000315 | GO:0008270(InterPro) | |
Cec04g1710 | 169 | Pfam | B-box zinc finger | 52 | 85 | IPR000315 | GO:0008270(InterPro) | |
Cec04g1710 | 169 | FunFam | B-box zinc finger protein 19 | 2 | 92 | - | - | |
Cec04g1710 | 169 | Gene3D | Classic Zinc Finger | 1 | 94 | - | - | |
Cec04g1710 | 169 | MobiDBLite | consensus disorder prediction | 149 | 169 | - | - | |
Cec04g1710 | 169 | CDD | Bbox1_BBX-like | 4 | 47 | IPR049808 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1710 | Cec-Chr4:36182194 | Cec07g1108 | Cec-Chr7:26281393 | 6.30E-20 | dispersed | |
Cec07g0908 | Cec-Chr7:22562950 | Cec04g1710 | Cec-Chr4:36182194 | 3.90E-55 | transposed | |
Cec04g1710 | Cec-Chr4:36182194 | Cec08g1502 | Cec-Chr8:26751415 | 2.60E-18 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29398 | PF00643 | zf-B_box | 2.80E-06 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g1710 | - | - | - | 0.0 |