Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1733 ATGATCAAGATTGGTTGGGGAGCGGGGCATCCTCGTGGTCGTGGCTCGTGGAGTGCACGATCTGGTGTTGGATTTTGTGGTATCGTTTCATATTATAGTGGAGATTTCCCTCTCTCTTTTGGAAGGGATCAGAGGAATTCAACCCTGAGATTTACTCGCCGTTTTGCTCTGTTTAAATACCCTTTTGGGATCCTTATGGAACAGTGGAAAACGGGAGATTTCACTCAATCTATTGTACCAGCTGATTTAGTTCCTTCTTCGTCTCTTCAACCTCAGCCTGTCGCTGTGTCGTCCACTCGCCACCATAACAACCAGCTAACTGAATCCAGGTTAAGAGCAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAGGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAACTCTTTCTGAAGAATCACGTGAGCTAACTCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAGTCAGAGATTGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCAGTTGTCATGGGGCCCCCATATTCCTACCCCGTTCCCGTTCCTGTTCCCCCTGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCTGGTGCCATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATCGATCAGCCCTCTGCCCATTATGCTTCCAATTCACATATATCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAGGCGTAGTAATGTGGAAAGATGCGACGAGTCCAACGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCTACACAGCAGGATGCATCCTCTGGAAGTAAGAAAGTGTTGGCGACATCCCGAAACAGAACAACTGATTTCAAGGCTGACATTGACATCGTCTGTCCAGTGCTGACCCTTCATTTAGGGAGTGGTTCAGTGGATTATCTGCTTGTAAATAATTGTCTGTCTCCTGTCCTGCTTGTTGTAAGGCTATTGCAGAGGCCATTCATATTGGAAATTGTCCAAAAGCTGCTTTCTCAAGTGGAACTGCAAAATTCATGCTGA 1293 44.7 MIKIGWGAGHPRGRGSWSARSGVGFCGIVSYYSGDFPLSFGRDQRNSTLRFTRRFALFKYPFGILMEQWKTGDFTQSIVPADLVPSSSLQPQPVAVSSTRHHNNQLTESRLRADAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYETLSEESRELTQEKNELREEKASLKSEIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIDQPSAHYASNSHISSKQDSRSKSSDQHRRSNVERCDESNDVATDLELKMPGSSTQQDASSGSKKVLATSRNRTTDFKADIDIVCPVLTLHLGSGSVDYLLVNNCLSPVLLVVRLLQRPFILEIVQKLLSQVELQNSC 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36367063 36370249 - CePI673135_04g017330.1 Cec04g1733 201215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1733 430 PANTHER TRANSCRIPTION FACTOR BHLH121 87 363 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cec04g1733 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 173 IPR011598 GO:0046983(InterPro)
Cec04g1733 430 MobiDBLite consensus disorder prediction 294 333 - -
Cec04g1733 430 Coils Coil 163 225 - -
Cec04g1733 430 SMART finulus 129 179 IPR011598 GO:0046983(InterPro)
Cec04g1733 430 CDD bHLH_AtILR3_like 128 202 - -
Cec04g1733 430 Pfam Helix-loop-helix DNA-binding domain 124 174 IPR011598 GO:0046983(InterPro)
Cec04g1733 430 MobiDBLite consensus disorder prediction 311 333 - -
Cec04g1733 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 193 IPR036638 GO:0046983(InterPro)
Cec04g1733 430 MobiDBLite consensus disorder prediction 296 310 - -
Cec04g1733 430 Gene3D - 122 225 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1203 Cec-Chr2:28309150 Cec04g1733 Cec-Chr4:36367063 1.40E-52 dispersed
Cec04g1733 Cec-Chr4:36367063 Cec06g1823 Cec-Chr6:31664546 8.80E-10 dispersed
Cec04g1733 Cec-Chr4:36367063 Cec05g1652 Cec-Chr5:27116955 1.10E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29402 PF00010 HLH 9.20E-09 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1733 - - - 0.0