Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1743 ATGGCCTCCTCCGACAGTTCCAATGCCGGAGTCGTCACCGCCGACGTCGAGACGGCCAAGAAGCTGCTCGATTCCGGCTATCCTCTTCTGGACGTTAGGACCGTTGAGGAGTTCAGGAGAGGGCATGTGGCGACGGAGAAAATCGTCAATATTCCTTATCTGTTTAGTTTTGGACATGGTAGGGAAAAAAATGATCGGTTTCTAGAGGAGGTGTCGGCGGTCTTTAACAAAGACGACCGCTTCCTTGTGGTTTGCGCAATTGGCATTAGGTCTCTGGAAGCCACTAAAGAACTTCAGGATAATGGTTTTAATAAGGTGAAAGATCAGGGCGGAGGGTTTGAAGCTTGGGTGAAGAATGGATTCCCAGTGGCTAAGCCTAAAGCAACAAGCAAAGATTTGCAGGGAAGATCGCAGTGTTTGTGTAGCGCCAGATTTGTCTTCCATAGTTCTACCTCTTCAACGATGGTGCTCGAGGCGACGATGATCTGTATTGACAACTCCGAATGGATGCGGAATGGCGATTACTCTCCTTCAAGATTTCAAGCTCAAGCAGATGCCATCAATCTTATTTGTGGAGCCAAGACGCAGTCTAATCCAGAGAATACGGTTGGGGTTCTCACAATGGCGGGAAAAGGTGTTCGTGTGCTGGTTACTCCTACCACTGACCTTGGCAAGATACTGGCATGCATGCACGGTTTGGAGATAGGTGGTGAGATAAACCTCGCAGCTGGCATCCAGGTGGCTCAGTTGGCCCTTAAGCATCGTCAGAACAAAAAACAGCAACAGAGGATTATAGTATTTGTTGGCAGTCCTGTCAAACATGAGAAGAAGTTACTGGAGATGATAGGAAGGAAGTTGAAGAAGAACAATGTGGCCCTTGACATTGTTGATTTTGGTGAAGAAGATGATGGCAAACCTGAAAAACTGGAAAGTCTTCTGGCAGCTGTGAACAGTAATGACACCAGTCACATTGTTCATGTTCCTGCTGGTCCAAATGTGCTCTCTGATGTACTCATCAGTACTCCTATCTTTACGGGAGACGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCTGCGGCTGCAGCAGCTGGTGGCGTATCTGGTTTTGATTTTGGGGTTGATCCCAACTTAGATCCTGAACTTGCCCTCGCTCTTAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAAGAGGCAGCTGCGAAAAAGGCCGCAGAGGAGAATACCAAGCAAGAAAAAGGAGCTGAGCAGCCATCTGGCTCACAGGATGCAACTATGACCGAGCGTTCTGGTCTTGCGACTTCTGATACTGAAAACAAGGCTGCTGATTTAATGGATGATGAGAATGCGCTGCTACAACAAGCCCTTGCTATGTCAATGGATAATCCTTCTGCTACCAGTGACATACGAGACATTGACATGTCAGAAGCCGCATCAGATGATCCTGAGTTGGCACTTGCTCTTCAGTTGTCTGTGCAGGAAGGCTCCAGTGACTCGACAAGCCAGACAGACATGAGTAAATTATTGGCCGATCAGTCTTTTGTGTCTTCTATTCTTGCTTCACTTCCAGGCGTAGATCCAAATGATCCATCTGTAAAAGATTTGCTTGCTTCCATGCAAAGCCAAGCCGAGGAAAAGAAAGACGAAGACAAATCATCAAAGGAAGATGAGAAATGA 1674 47.49 MASSDSSNAGVVTADVETAKKLLDSGYPLLDVRTVEEFRRGHVATEKIVNIPYLFSFGHGREKNDRFLEEVSAVFNKDDRFLVVCAIGIRSLEATKELQDNGFNKVKDQGGGFEAWVKNGFPVAKPKATSKDLQGRSQCLCSARFVFHSSTSSTMVLEATMICIDNSEWMRNGDYSPSRFQAQADAINLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTTDLGKILACMHGLEIGGEINLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPVKHEKKLLEMIGRKLKKNNVALDIVDFGEEDDGKPEKLESLLAAVNSNDTSHIVHVPAGPNVLSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEENTKQEKGAEQPSGSQDATMTERSGLATSDTENKAADLMDDENALLQQALAMSMDNPSATSDIRDIDMSEAASDDPELALALQLSVQEGSSDSTSQTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQAEEKKDEDKSSKEDEK 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36456528 36465770 + CePI673135_04g017430.1 Cec04g1743 201225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1743 557 ProSiteProfiles Rhodanese domain profile. 23 125 IPR001763 -
Cec04g1743 557 SMART rhod_4 14 122 IPR001763 -
Cec04g1743 557 Pfam von Willebrand factor type A domain 160 269 IPR002035 -
Cec04g1743 557 CDD VWA_26S_proteasome_subunit 155 342 - -
Cec04g1743 557 Pfam Ubiquitin interaction motif 446 459 IPR003903 -
Cec04g1743 557 Pfam Ubiquitin interaction motif 478 493 IPR003903 -
Cec04g1743 557 Pfam Ubiquitin interaction motif 378 391 IPR003903 -
Cec04g1743 557 Pfam Rhodanese-like domain 16 118 IPR001763 -
Cec04g1743 557 MobiDBLite consensus disorder prediction 394 412 - -
Cec04g1743 557 Coils Coil 386 411 - -
Cec04g1743 557 MobiDBLite consensus disorder prediction 539 557 - -
Cec04g1743 557 SMART uim 376 395 IPR003903 -
Cec04g1743 557 SMART uim 478 497 IPR003903 -
Cec04g1743 557 SMART uim 446 465 IPR003903 -
Cec04g1743 557 CDD RHOD 17 117 - -
Cec04g1743 557 SMART VWA_4 156 329 IPR002035 -
Cec04g1743 557 ProSiteProfiles VWFA domain profile. 159 343 IPR002035 -
Cec04g1743 557 FunFam 26S proteasome regulatory subunit N10 374 460 - -
Cec04g1743 557 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 155 556 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008540(PANTHER)|GO:0031593(PANTHER)|GO:0043161(PANTHER)
Cec04g1743 557 MobiDBLite consensus disorder prediction 413 435 - -
Cec04g1743 557 Gene3D - 3 124 IPR036873 -
Cec04g1743 557 Gene3D - 374 460 - -
Cec04g1743 557 Gene3D von Willebrand factor, type A domain 157 340 IPR036465 -
Cec04g1743 557 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 8 126 IPR036873 -
Cec04g1743 557 MobiDBLite consensus disorder prediction 519 557 - -
Cec04g1743 557 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 376 395 IPR003903 -
Cec04g1743 557 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 478 497 IPR003903 -
Cec04g1743 557 CDD PSMD4_RAZUL 500 546 IPR049590 -
Cec04g1743 557 FunFam 26S proteasome non-ATPase regulatory subunit 4 157 340 - -
Cec04g1743 557 MobiDBLite consensus disorder prediction 394 435 - -
Cec04g1743 557 SUPERFAMILY vWA-like 158 329 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1743 K03029 - - csv:101221273 705.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1742 Cec-Chr4:36451323 Cec04g1743 Cec-Chr4:36456528 1.10E-41 tandem
Cec02g1242 Cec-Chr2:28943664 Cec04g1743 Cec-Chr4:36456528 3.10E-23 transposed
Cec10g0066 Cec-Chr10:684266 Cec04g1743 Cec-Chr4:36456528 3.10E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1130 . . . . . . . . . . Cma03g00677 . Car03g00625 . Sed10g1012 . . Bhi03g00847 Tan03g2093 Cmetu04g2856 . Hepe04g1602 . . Cla01g01988 Cam01g2086 Cec04g1743 Cco04g1808 . Cmu01g1980 Cre04g1657 . . . . . . . Cme08g00942 . . . . . Bpe06g00334 . . . . . . . . . . . Bhi10g02362 . . . . . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 . Csa06g03340 . Cme11g00109
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58