Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1771 ATGTCGGTTCCCTCGAAGAAGAAGACGTTTATTTCAATTGAAACGTTGAAAGAAGAGAGATCTACCCGATACTTTTCTTCCGATTCAAACGTTGATCATTTGAAAGAAACCTCCATTTTTGGATGGGAAGGTTCGAGCTGTAAACAGGATGTCAAGATCTTTTACACACAAAGTACAGCAGCTACTGAAAATGGCCATTTCTTGATACGAAGACCCACTAATCTCAGTGCCCCACGTTGTGCTGCCTTGAAAAACAATCAATCAACAAAGTCCATCTTGTTGAGTTTCTGCTCACATGGAGGATTCCGAATGCCCCTTGTTTTTGCTTTAGTTTTCATGGCGGAAAGTTTAGAAGAGGTCTATCTCCATGGCGATCTCGACCTCAAAATCTTCGAGGCTGCCGAGTTGCCTAACATGGACATTGTATCTGAGCGTCTTCGTCGTTGCTTCACAGCCTGTGGTACTCTCGATTACTCTGCCATTAAATCCGTCGCAACCAACTCCCGTTCTGCCGGCGGTGAGGGGAAAGTCCACCGCGGCCGTGGAAAAATTATCACGAGCGATCCATATGTTACCGTCCGGGTCCCTCAAGCCACCGTCGCTCGGACCCGCGTCATAAAGAATTCCCAGAATCCCTATTGGAACGAGCATTTCATTATCCCTCTTGCACAGAAAATGGCCGAGTTGGAATTCCAGGTGAAAGACGACGATGTCTTTGGCGCTGAAGTTATGGGGACGGTTAAAATCTCTGCTCAGAAAATTGCCTCCGGTGAGACAATTAGTGGGTGGTATCCGGTGCTTGGCTCAAATGGCAAGCCACCGAAGCTTGGCACTTCACTCAGAATCGAAATGAAGTTCACCTCAGTTGAAGAAAACCCGCTATATCGACACGGCATTGCTGGAGATCCCGAGCATAAGGGTGTGCGACACACTTATTTTCCTGTCAGGAAAGGGAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTGCTGCCGCAGATTGAATTGGATGGAGGGAATGTTTATAGACAGGAGAAATGTTGGGAGGATATCTGCTATGCTATATCAGAGGCTCATCATATGATTTATATTGTTGGTTGGTCGGTTTTTCATAAGGTGAAGCTGGTTAGAGAGCCAACCAGGCCGTTGCCAAGAGGTGGAGATTTGACTCTTGGTGACCTCCTCAAATACAAATCAGAAGAGGGTGTCCGAGTTTTGATGCTAGTTTGGGATGATAAGACTTCTCACGATAAGTTCTTCATCAACACGGAAGGATTGATGCAGACACATGACGAGGAAACCAGAAAATTTTTCAAGCATTCTTCTGTGATCTGTTTGCTCTCACCTCGCTATCCAAGCGGCAAGCTAAGCTATGTGAAACAAAAGGTTGTAGGGACTGTCTTCACGCACCATCAAAAGTGTGTCCTAGTTGATACACAGGGATATGGTAATAATAGAAAGATAGCTGCTTTTCTCGGAGGTCTTGATCTCTGTGATGGTCGATACGATACACCTGAGCATCGATTGTTCCATGACCTTGACACAGTATTTAAGGATGATTTTCATAACCCTACAATTCCTGCTGGAGCCACAGCTCCAAGGCAACCATGGCATGACTTGCACTGTCGGATTGATGGGCCAGCTGCTTATGACTTGCTTATAAACTTTGAGCAACGTTGGAACAGAGCTACAAGATGGACAGAGTTTGGCCTACGGTGCAGGAGAATTACTCATTGGCACGATGCTTTAATAAAGATAGAGCGTATTTCATGGATACTAAGCCCTCACGTAACTTTCTTAGAAGATGGTTCATTAAAAGTTCCAGAGGATGACCCTAAAGTATATGTTTCGAAGGAAGAAGATCCTGAAAATTGGCATGTTCAGATTTTTCGATCCATTGACTCTGGTTCAGTTAAAGGATTTCCAAAAGATGTCCATCTCGCCGAGTCGCAGAACCTTGTTTGTGCAAAAAACCTGGCTATTGAGAAAAGCATTGAAATGGCATATATCCAAGCTATTAGATCGGCACAACATTTCATTTATATTGAAAATCAGTATTTTATTGGATCATCATACGGATGGCCGGGATATAAAAATGCCGGAGCTGATCATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCAAGCAAAATAAGAGCCAAGGAAAGATTTGTTGTATATATTGTCATACCAATGTGGCCTGAGGGAGATCCGAATAGCGGTCCCATGCAAGAGATTCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAACTGAAGTCATCAGAGCAACCAGATTTGCACCCTCTGGACTTTCTAAATTTTTACTGCCTTGGAAAACGGGAAGAACTTCCTGAGAATGGGCCGACCACTGATGATGCAACGGCATGTAATTCACTAAAACATCGACGGTTTATGATTTACGTGCATGCCAAGGGGATGATAGTAGATGATGAATATGTAATTATTGGGTCTGCAAATATTAACCAAAGATCTATGGCTGGAACAAAAGACACCGAGATAGCCACAGGCGCATATCAGCCGCATCACACGTGGGTGAAAAAGAAGAAACACCCACATGGTCAGATTTACGGATACAGAATGTCGTTGTGGAGCGAGCATCTTGGAATGCTCAATCCATGTTTCGAGGAGCCAGAAGCTTTGGAATGTGTAAGAAAAGTCAATGGGATTGCTGAGGATAACTGGAACAGATTCACAGCCGATGAATTCACGACATTGCAGGGTCACCTTCTCAGGTATCCGGTGCTTGTAGATGGGGACGGAAAAGTCAGCCCTCTGCCTGGACATGAAAACTTCCCTGATGTAGGGGGGAAGATAATAGGGTCTCATTCAACTGCAATTCCTGATGTTGTGACCACATAG 2910 44.57 MSVPSKKKTFISIETLKEERSTRYFSSDSNVDHLKETSIFGWEGSSCKQDVKIFYTQSTAATENGHFLIRRPTNLSAPRCAALKNNQSTKSILLSFCSHGGFRMPLVFALVFMAESLEEVYLHGDLDLKIFEAAELPNMDIVSERLRRCFTACGTLDYSAIKSVATNSRSAGGEGKVHRGRGKIITSDPYVTVRVPQATVARTRVIKNSQNPYWNEHFIIPLAQKMAELEFQVKDDDVFGAEVMGTVKISAQKIASGETISGWYPVLGSNGKPPKLGTSLRIEMKFTSVEENPLYRHGIAGDPEHKGVRHTYFPVRKGSSMRLYQDAHVPDGLLPQIELDGGNVYRQEKCWEDICYAISEAHHMIYIVGWSVFHKVKLVREPTRPLPRGGDLTLGDLLKYKSEEGVRVLMLVWDDKTSHDKFFINTEGLMQTHDEETRKFFKHSSVICLLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKIAAFLGGLDLCDGRYDTPEHRLFHDLDTVFKDDFHNPTIPAGATAPRQPWHDLHCRIDGPAAYDLLINFEQRWNRATRWTEFGLRCRRITHWHDALIKIERISWILSPHVTFLEDGSLKVPEDDPKVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDVHLAESQNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADHLIPMELALKIASKIRAKERFVVYIVIPMWPEGDPNSGPMQEILYWQGQTMQMMYDIVASELKSSEQPDLHPLDFLNFYCLGKREELPENGPTTDDATACNSLKHRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWVKKKKHPHGQIYGYRMSLWSEHLGMLNPCFEEPEALECVRKVNGIAEDNWNRFTADEFTTLQGHLLRYPVLVDGDGKVSPLPGHENFPDVGGKIIGSHSTAIPDVVTT 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36650608 36658338 + CePI673135_04g017710.1 Cec04g1771 201253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1771 969 PANTHER PHOSPHOLIPASE D 121 956 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cec04g1771 969 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 814 841 IPR001736 GO:0003824(InterPro)
Cec04g1771 969 SMART C2_3c 125 263 IPR000008 -
Cec04g1771 969 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 122 287 IPR035892 -
Cec04g1771 969 CDD C2_plant_PLD 120 287 - -
Cec04g1771 969 Gene3D C2 domain 123 295 IPR035892 -
Cec04g1771 969 Pfam Phospholipase D C terminal 890 958 IPR024632 -
Cec04g1771 969 Pfam Phospholipase D Active site motif 816 841 IPR001736 GO:0003824(InterPro)
Cec04g1771 969 FunFam Phospholipase D delta 341 585 - -
Cec04g1771 969 PIRSF PLD_plant 111 969 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cec04g1771 969 Gene3D Endonuclease Chain A 638 859 - -
Cec04g1771 969 SMART pld_4 469 504 IPR001736 GO:0003824(InterPro)
Cec04g1771 969 SMART pld_4 814 841 IPR001736 GO:0003824(InterPro)
Cec04g1771 969 Gene3D Endonuclease Chain A 339 577 - -
Cec04g1771 969 ProSiteProfiles C2 domain profile. 152 264 IPR000008 -
Cec04g1771 969 Pfam C2 domain 186 266 IPR000008 -
Cec04g1771 969 SUPERFAMILY Phospholipase D/nuclease 666 899 - -
Cec04g1771 969 SUPERFAMILY Phospholipase D/nuclease 309 573 - -
Cec04g1771 969 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 469 504 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1606 Cec-Chr2:33642447 Cec04g1771 Cec-Chr4:36650608 6.50E-34 dispersed
Cec04g1771 Cec-Chr4:36650608 Cec09g0278 Cec-Chr9:2409357 9.00E-196 dispersed
Cec06g0020 Cec-Chr6:237099 Cec04g1771 Cec-Chr4:36650608 2.80E-262 transposed
Cec10g0355 Cec-Chr10:4190904 Cec04g1771 Cec-Chr4:36650608 8.10E-241 transposed
Cec04g1771 Cec-Chr4:36650608 Cec08g1449 Cec-Chr8:26250352 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1771 K01115 - csv:101217251 1675.6