Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1774 ATGAGTTCCTGTATACCTCAAGACAACGGCTTGCTCCCGGGGTTCGTTGATCCCGAACAATCAACTCCCTACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACCGCAGCCACCATGGTCGGCCTCCAAACCGTTCCTGGGCTGGTCATCCTCTACGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCTGCCTTCATGGCCCTCTATGGCTTTGCTGCAGTGCTCGTCTGTTGGGTGTTGTGGGCACATCATATGGCATTTGGCGACCGATTGTTCTGGCTCATTGGTAGGCCCGGCGTAGCGCTGTCCGAAAGTTACCTTCTTTCACAGTCTACACAAGGCTGTTTTCCGATGGCTGACTACGTCTTTTTCCAGTTTGCTTTTGCTGCCATTACTGTCGTGTTACTCGCCGGGTCCTTGCTGGGAAGGATGAATTTTGGTGCATGGATGCTTTTTGTTCCAATGTGGTTAACTCTTTGTTACACTGTGGGCGCATTCTGTATATGGGGGAATGGGTTTATTCAGAAGTACCTCATTGACTACGCCGGCGGCTACGTCATTCATCTTTCTTCTGGGGTGGCTGGTTTCACTGCTGCTTACTGGGTCGGGCCACGACACTCCCGAGACAGGCAAAACTTCCCACCAAACAACATACTGCACATGGTTGGTGGTGCAGGGTTTCTTTGGATGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGCGGGTCGTATTACATCGCTAGCCATTTTGAACACACATGTTTGCACCGCAACAAGTCTCTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGTGCTATTCAAGGGATCATCACTGGCCTTGTCTGTATCACTCCTGGTGCAGGACTTGTAGACACTCTTGCAGCTGTGGTGATGGGCGTCCTCGCTGGTTTGGTTCCATGGTACACCATGATGGTGCTGCATAGAAGGTTGGCATTCCTTCAGTGTGTCGACGATACTCTGGGCGTCTTCCACACGCACGCTGTGGCTGGTTCCATGGGAGGCCTTCTCACAGGTTTCTTTGCCAAACCCAGCCTTCTGAGAATGATGTATCCAGATTCCCTATACAGTCCAGGCTTCCTGTACGCTATCTCCGATAGAAAGCTCAAAGATGGCCTCAAACAAATCGGCATCCAGTTCGCAGGAGCACTGTTTATTACCCTCTGGAATGCCATTTTTACCAGTATTATATGTTACCTGATTAGCCATATTGTTAACTTACGGATGAAAGAAGAGGACCTGGAGATTGGTGATGATGCTGCTCACGGAGAAGAACCCTACGCGTTGTGGGGTGACGGAGAGAAGATGCCATCTTCATTTCGTCTTCCACACACCCCTAGGTTTCCTTCATTATGCAGGTGGGATTAG 1419 49.96 MSSCIPQDNGLLPGFVDPEQSTPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHHMAFGDRLFWLIGRPGVALSESYLLSQSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFGAWMLFVPMWLTLCYTVGAFCIWGNGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSRDRQNFPPNNILHMVGGAGFLWMGWTGFNGGAPFAAGRITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAIQGIITGLVCITPGAGLVDTLAAVVMGVLAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLRMMYPDSLYSPGFLYAISDRKLKDGLKQIGIQFAGALFITLWNAIFTSIICYLISHIVNLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPSLCRWD 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36667342 36668984 - CePI673135_04g017740.1 Cec04g1774 201256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1774 472 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005886(InterPro)
Cec04g1774 472 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005886(InterPro)
Cec04g1774 472 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005886(InterPro)
Cec04g1774 472 PRINTS Rhesus blood group protein signature 307 325 IPR002229 GO:0005886(InterPro)
Cec04g1774 472 PANTHER AMMONIUM TRANSPORTER MEP2 23 454 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Cec04g1774 472 NCBIfam ammonium transporter 30 444 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec04g1774 472 Gene3D Ammonium transporter AmtB like domains 16 447 IPR029020 -
Cec04g1774 472 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec04g1774 472 Pfam Ammonium Transporter Family 32 444 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec04g1774 472 SUPERFAMILY Ammonium transporter 25 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1774 Cec-Chr4:36667342 Cec08g1348 Cec-Chr8:25397209 8.40E-163 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1774 K03320 - csv:101218977 929.858