Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1815 ATGTTTCCCAGACTCGTTAATCCCGACGGAGATATCCAGATCCATGGCCCCCGTGGTTCTGTTGCTTCCGACCTAACCCACAGTCACCGAGGAGACCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGCCTCCGCTGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTCACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATCTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACGAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTTCAAAGTAAATTACATCTGCAAGTTGAGGCAGAGAAGCACCTACGAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGGAGGCGCAGTTTCGGACTCAGACAGCAAGAAGTCCCAAGGACAGGATCGTAAGAGCCCAAGAGGTTCCTCCATTGACCCACTTGGTTTCTATGCTTCCCAATCGCAAGAGATGGAAAGAGTGAATGGCACGGAAGAAGTGCAGGCTAATCTCCCTTGCCAAAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCCAACGAGAGTCCCGGAGGATTGACTATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGATTTGGGGTGAAGCTAAGGAAAGAATACAAGATGCTAACATCATCCAAGTTAACCATCACGGCGTATCCGGATGCGACATGTGGGGATGA 942 47.45 MFPRLVNPDGDIQIHGPRGSVASDLTHSHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGQDRKSPRGSSIDPLGFYASQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLTMEKSPVASKKNMVNLDSATASLIWGEAKERIQDANIIQVNHHGVSGCDMWG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36909216 36914076 - CePI673135_04g018150.1 Cec04g1815 201297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1815 313 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Cec04g1815 313 MobiDBLite consensus disorder prediction 1 26 - -
Cec04g1815 313 Gene3D - 41 99 - -
Cec04g1815 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 291 IPR046955 GO:0003700(InterPro)
Cec04g1815 313 MobiDBLite consensus disorder prediction 191 216 - -
Cec04g1815 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Cec04g1815 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Cec04g1815 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Cec04g1815 313 FunFam Myb family transcription factor 41 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1815 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1969 Cec-Chr2:37533770 Cec04g1815 Cec-Chr4:36909216 8.40E-30 dispersed
Cec04g1815 Cec-Chr4:36909216 Cec05g0383 Cec-Chr5:3124482 3.60E-45 dispersed
Cec04g1814 Cec-Chr4:36902374 Cec04g1815 Cec-Chr4:36909216 4.90E-21 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0383 . 12 266 G2-like Transcription Factor Family AT3G24120 63.9 1.8e-78 289.7
Cec02g1969 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cec07g0267 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Cec09g2389 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cec04g1815 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cec05g1231 . 247 447 G2-like Transcription Factor Family AT5G16560 57.3 1.3e-44 177.6
Cec09g1158 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 1.2e-40 164.5
Cec05g2157 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 6.6e-41 164.5
Cec08g1594 . 54 140 G2-like Transcription Factor Family AT5G42630 85.1 2.6e-37 152.5
Cec05g2524 . 19 256 G2-like Transcription Factor Family AT1G25550 56.5 9.3e-53 204.1
Cec08g0536 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 6.0e-52 201.4
Cec03g0127 . 1 269 G2-like Transcription Factor Family AT3G46640 51.9 2.6e-62 236.1
Cec10g1667 . 5 185 G2-like Transcription Factor Family AT3G46640 50.4 4.9e-37 152.1
Cec04g0650 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 3.1e-74 275.4
Cec10g1667 . 1 283 G2-like Transcription Factor Family AT5G05090 53.6 8.9e-69 257.3
Cec05g0383 . 12 314 G2-like Transcription Factor Family AT4G13640 57.7 8.6e-65 244.2
Cec05g0383 . 12 266 G2-like Transcription Factor Family AT3G24120 63.9 1.8e-78 289.7
Cec02g1969 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cec07g0267 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Cec09g2389 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cec04g1815 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cec09g2389 . 1 381 G2-like Transcription Factor Family AT1G79430 55.1 1.7e-86 316.6
Cec02g1969 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Cec05g0383 . 38 202 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cec04g1814 . 102 319 G2-like Transcription Factor Family AT2G01060 65.3 2.1e-53 206.1
Cec04g0650 . 1 301 G2-like Transcription Factor Family AT3G10760 63.3 9.4e-92 334.0
Cec10g1667 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 2.7e-83 305.8
Cec04g0650 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007112 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29406 PF00249 Myb_DNA-binding 8.40E-06 CL0123 Cec TF