Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1828 ATGGCCTCAATTGCTGGTTCCAAAGCTTCCTCAAATCAGCCACAAAAACCAGCTAATGGTGTAATGGCTAATGGAAAGGATACGGGGCTCTTGCCTCCGCAGATTTCGAAGTCAAGCAAACCTGCATCAGTTACTTCTGAGCAGTCTAAATCAGTAAAGAGTATCTCAAAGAAGGATATGGAAATATGTCCCGACAAAAAGTCACCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACTGAAAATTTTAATTTCAGCATATCCTCACCTGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGATAAGTGTTCACCTGGAAGCTCCCTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGGCAAAGTAAGTGATGGGACTAGCTGTCTTGCCAAGACCAGTGGAAGTACAAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATGTCGAGGGAGCACGAGCAGTGATGTAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCGATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGGGGAACCAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCAAGTCGTAAAAAGTTGCTTCGTGCACAGACAGAAAGAGAAATACTTCAATCTCTTGATCACCCCTTCCTTCCAACGTTGTACACCCACTTTGAGACGGAAAAATTCTCATGCTTGGTGATGGAGTTTTGCCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCCGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCTCTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAATCCGACTCTTGTCAAAAATCTCTCTGCAGAGTCGGAGGCTTTAAGAAGGAACACAGGTTACTGCGTGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCTCGTCTCTTTTCTAGTAAGTCAAAGAAGGAACGAAAACCCAAAATTGATATGGGAAATCAGGTCAGCCCATTGCCAGAGCTCATAGCAGAACCAACCGATGCCCGATCCATGTCTTTCGTAGGAACCCATGAGTACTTGGCACCTGAGATAATCAAGGGTGAAGGCCATGGAAGTGCTGTGGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTACTATTTGGTAAAACTCCTTTCAAGGGGTCGGGAAATCGAGCTACATTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACCAGTTGTGAGTTTTGCTGCAAAGGATCTGATAAGAGGATTGCTAGTGAAGGAACCACAACAAAGATTGGCTTATAAACGTGGAGCAACTGAGATTAAGCAGCATCCTTTCTTTGAAGGTGTAAATTGGGCATTAATACGTTGTGCCACTCCTCCCGAAATCCCAAGGCCGGTCGAGATTGAGAGAATACCACATGCAGTGGCGTCAACCAGTGAAAAGGCCACAGCTATAGCAGCAGTTGCTGCAGATAAAAAAGCTTCCGATAATTATTTCGAATTTGATTTCTTTTAG 1839 43.88 MASIAGSKASSNQPQKPANGVMANGKDTGLLPPQISKSSKPASVTSEQSKSVKSISKKDMEICPDKKSPVSNQNGSAKLLTENFNFSISSPGLKQTSTEVDSPHNEDKCSPGSSLDQEKKTSEYGSVKSSSFSGKVSDGTSCLAKTSGSTKVSDHGNFVESGKSSICRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKNLSAESEALRRNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKATAIAAVAADKKASDNYFEFDFF 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37009330 37012696 + CePI673135_04g018280.1 Cec04g1828 201310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1828 612 MobiDBLite consensus disorder prediction 1 19 - -
Cec04g1828 612 FunFam Serine/threonine-protein kinase D6PK-like 215 300 - -
Cec04g1828 612 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Cec04g1828 612 Gene3D Transferase(Phosphotransferase) domain 1 301 368 - -
Cec04g1828 612 FunFam Serine/threonine-protein kinase AGC1-7 447 572 - -
Cec04g1828 612 MobiDBLite consensus disorder prediction 115 140 - -
Cec04g1828 612 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Cec04g1828 612 MobiDBLite consensus disorder prediction 1 76 - -
Cec04g1828 612 MobiDBLite consensus disorder prediction 88 140 - -
Cec04g1828 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1828 612 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1828 612 Pfam Protein kinase domain 218 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1828 612 CDD STKc_phototropin_like 216 577 - -
Cec04g1828 612 FunFam serine/threonine-protein kinase D6PK-like 301 368 - -
Cec04g1828 612 MobiDBLite consensus disorder prediction 162 181 - -
Cec04g1828 612 SUPERFAMILY Protein kinase-like (PK-like) 192 581 IPR011009 -
Cec04g1828 612 SMART serkin_6 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1828 612 MobiDBLite consensus disorder prediction 100 114 - -
Cec04g1828 612 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1828 612 PANTHER FLIPPASE KINASE 1-RELATED 78 586 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cec04g1828 612 MobiDBLite consensus disorder prediction 31 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1135 Cec-Chr4:30966628 Cec04g1828 Cec-Chr4:37009330 3.30E-149 dispersed
Cec04g1828 Cec-Chr4:37009330 Cec10g1395 Cec-Chr10:28259783 1.30E-184 dispersed
Cec01g1188 Cec-Chr1:18882728 Cec04g1828 Cec-Chr4:37009330 1.20E-225 transposed
Cec04g0195 Cec-Chr4:7492451 Cec04g1828 Cec-Chr4:37009330 9.20E-151 transposed
Cec11g0297 Cec-Chr11:3207869 Cec04g1828 Cec-Chr4:37009330 1.30E-113 transposed
Cec02g0325 Cec-Chr2:2987582 Cec04g1828 Cec-Chr4:37009330 1.40E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71940 PF00069 Pkinase 6.50E-38 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1828 K08286 - csv:101209748 1122.46