Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g1874 | ATGGAGGGTCCAAGTGGGAGTTCTTCGGGAGGTATGATGAATTTTGGAAATCAAAATAATAATAATAATAACAATAATAGTAATGGGTTATGTTCTATGATGATGATGATGCCATTAATCTCCTCCTCTTCTCAACAAGGAGGAAATGGGTCATGTACTCCATTTCTTCCTCTTCCTCCTAATTACAACAACAACAATAATAATACTTCCAATTCTATTTGTAATTACTTCATGGATGAAAACAACAACAACAACGAGGGTAGTAATGGAGGAGGGAATTCTTGTTGTGAAGTAAAGGCTAAAATCATGGCTCATCCCCACTACCACCGTCTCCTCGCTGCTTATGTCAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCTCGGCTTGAAGAAGTGTGTGCAAGTGCAGCAATAATGAGTGGTAATAGTAGTGGGTGTATTGGGGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAAATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCCCTCTCTATCTCTTCCTTTCACGCCGCTGCTTGTGGCGAGGCATTTGATAGGAACGGATCGTCTGAAGAGGAAGTTGATATCAATGGGAACTCGATCGATCCTCAGGCGGAAGATCGTGAACTGAAAGGTCAGCTGCTGCGCAAATACAGCGGATACTTAGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAAGCCAGACAACAACTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAATCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACTGTCTTGGGGAATCCTTTTCCCTTGGATATCTCTCCTACTCTACTCTAA | 1056 | 42.33 | MEGPSGSSSGGMMNFGNQNNNNNNNNSNGLCSMMMMMPLISSSSQQGGNGSCTPFLPLPPNYNNNNNNTSNSICNYFMDENNNNNEGSNGGGNSCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEVCASAAIMSGNSSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSFHAAACGEAFDRNGSSEEEVDINGNSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 37321715 | 37324502 | + | CePI673135_04g018740.1 | Cec04g1874 | 201356 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g1874 | 351 | SMART | ELK_2 | 233 | 254 | IPR005539 | GO:0003677(InterPro) | |
Cec04g1874 | 351 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cec04g1874 | 351 | SUPERFAMILY | Homeodomain-like | 255 | 329 | IPR009057 | - | |
Cec04g1874 | 351 | Gene3D | - | 258 | 320 | - | - | |
Cec04g1874 | 351 | SMART | KNOX2_2 | 145 | 196 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cec04g1874 | 351 | ProSiteProfiles | ELK domain profile. | 233 | 253 | IPR005539 | GO:0003677(InterPro) | |
Cec04g1874 | 351 | SMART | KNOX1_2 | 96 | 140 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cec04g1874 | 351 | CDD | homeodomain | 265 | 317 | IPR001356 | GO:0003677(InterPro) | |
Cec04g1874 | 351 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 115 | 323 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cec04g1874 | 351 | FunFam | Homeobox protein knotted-1-like 2 | 258 | 320 | - | - | |
Cec04g1874 | 351 | Pfam | ELK domain | 233 | 254 | IPR005539 | GO:0003677(InterPro) | |
Cec04g1874 | 351 | Pfam | KNOX2 domain | 148 | 194 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cec04g1874 | 351 | Pfam | KNOX1 domain | 98 | 136 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cec04g1874 | 351 | ProSiteProfiles | 'Homeobox' domain profile. | 253 | 316 | IPR001356 | GO:0003677(InterPro) | |
Cec04g1874 | 351 | SMART | HOX_1 | 255 | 320 | IPR001356 | GO:0003677(InterPro) | |
Cec04g1874 | 351 | Pfam | Homeobox KN domain | 273 | 312 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cec04g1874 | 351 | ProSitePatterns | 'Homeobox' domain signature. | 291 | 314 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec02g1575 | Cec-Chr2:33345491 | Cec04g1874 | Cec-Chr4:37321715 | 3.60E-64 | dispersed | |
Cec04g1874 | Cec-Chr4:37321715 | Cec05g1945 | Cec-Chr5:31502954 | 8.00E-78 | dispersed | |
Cec02g0230 | Cec-Chr2:2194432 | Cec04g1874 | Cec-Chr4:37321715 | 1.10E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29410 | PF03791 | KNOX2 | 5.50E-20 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g1874 | - | - | - | 0.0 |