Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1874 ATGGAGGGTCCAAGTGGGAGTTCTTCGGGAGGTATGATGAATTTTGGAAATCAAAATAATAATAATAATAACAATAATAGTAATGGGTTATGTTCTATGATGATGATGATGCCATTAATCTCCTCCTCTTCTCAACAAGGAGGAAATGGGTCATGTACTCCATTTCTTCCTCTTCCTCCTAATTACAACAACAACAATAATAATACTTCCAATTCTATTTGTAATTACTTCATGGATGAAAACAACAACAACAACGAGGGTAGTAATGGAGGAGGGAATTCTTGTTGTGAAGTAAAGGCTAAAATCATGGCTCATCCCCACTACCACCGTCTCCTCGCTGCTTATGTCAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCTCGGCTTGAAGAAGTGTGTGCAAGTGCAGCAATAATGAGTGGTAATAGTAGTGGGTGTATTGGGGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAAATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCCCTCTCTATCTCTTCCTTTCACGCCGCTGCTTGTGGCGAGGCATTTGATAGGAACGGATCGTCTGAAGAGGAAGTTGATATCAATGGGAACTCGATCGATCCTCAGGCGGAAGATCGTGAACTGAAAGGTCAGCTGCTGCGCAAATACAGCGGATACTTAGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAAGCCAGACAACAACTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAATCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACTGTCTTGGGGAATCCTTTTCCCTTGGATATCTCTCCTACTCTACTCTAA 1056 42.33 MEGPSGSSSGGMMNFGNQNNNNNNNNSNGLCSMMMMMPLISSSSQQGGNGSCTPFLPLPPNYNNNNNNTSNSICNYFMDENNNNNEGSNGGGNSCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEVCASAAIMSGNSSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSFHAAACGEAFDRNGSSEEEVDINGNSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37321715 37324502 + CePI673135_04g018740.1 Cec04g1874 201356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1874 351 SMART ELK_2 233 254 IPR005539 GO:0003677(InterPro)
Cec04g1874 351 MobiDBLite consensus disorder prediction 1 21 - -
Cec04g1874 351 SUPERFAMILY Homeodomain-like 255 329 IPR009057 -
Cec04g1874 351 Gene3D - 258 320 - -
Cec04g1874 351 SMART KNOX2_2 145 196 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec04g1874 351 ProSiteProfiles ELK domain profile. 233 253 IPR005539 GO:0003677(InterPro)
Cec04g1874 351 SMART KNOX1_2 96 140 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec04g1874 351 CDD homeodomain 265 317 IPR001356 GO:0003677(InterPro)
Cec04g1874 351 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 115 323 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec04g1874 351 FunFam Homeobox protein knotted-1-like 2 258 320 - -
Cec04g1874 351 Pfam ELK domain 233 254 IPR005539 GO:0003677(InterPro)
Cec04g1874 351 Pfam KNOX2 domain 148 194 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec04g1874 351 Pfam KNOX1 domain 98 136 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec04g1874 351 ProSiteProfiles 'Homeobox' domain profile. 253 316 IPR001356 GO:0003677(InterPro)
Cec04g1874 351 SMART HOX_1 255 320 IPR001356 GO:0003677(InterPro)
Cec04g1874 351 Pfam Homeobox KN domain 273 312 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec04g1874 351 ProSitePatterns 'Homeobox' domain signature. 291 314 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1575 Cec-Chr2:33345491 Cec04g1874 Cec-Chr4:37321715 3.60E-64 dispersed
Cec04g1874 Cec-Chr4:37321715 Cec05g1945 Cec-Chr5:31502954 8.00E-78 dispersed
Cec02g0230 Cec-Chr2:2194432 Cec04g1874 Cec-Chr4:37321715 1.10E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29410 PF03791 KNOX2 5.50E-20 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1874 - - - 0.0