Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1882 ATGGCTTTCCCATTATTATTCCTCTTTTTCCTACCTACAATTATCTCCACGCCCAACCCCAACAACTATTATAGCGAACCAGCCCTCAACCCCATCGAAGCATGCTGGCGGAGCAATCCCAATTGGGCAGCCAACCGCCAAGCCTTGGCGGACTGCGCCGTCGGGTTCGGCAGCGACGCCACGGGAGGCAAATTCGGGTCAATCTACGTGGTCACAGACCCATCGGACGACCCGGAATATCCGGAACCCGGAACGCTGCGTTTTGGGGTGATTCAAACGGAGCCGTTATGGATTGTATTCGCAACAGATATGGCGATTACCCTTAAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGGCGAGGGGCAAAAGTGGAAATTAGTAATGGGCCATGTATTACTATCCAAAACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAACCGGGGAAGCCTGGGCGCGTGAGAAGCACCGTCACTCACTGTGGGGACCGCCGCGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCCTCCACTGCCGTCACCATCTCCAACAATTACCTCACTCAACATGATAAAGTGATCCTTCTTGGTCACAACGATGACTTTACAGATGATAGAATCATGAAAGTGACTGTAGCTTTCAATCGTTTTGGCGATGGGCTTGTTCAAAGAATGCCAAGGGTAAGATTTGGGTATGCTCATGTTGCTAATAATTGGTACAACAAGTGGGAAATGTACGCTATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAACTACTTCATGGCTCCCGATGACTCATTGTCAAAACAAGTTACAAAGAGAGAGGTTTATGCGAACGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTTGTCCCATCTGGGTCGGGATCTTGTAAGCCTTTCTACACTCAAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCTCCTCTTTTGACTGAAACTGCTGGCACTTTGAGTTGTGTTCTTGGTAAACCTTGTTGA 1134 47.88 MAFPLLFLFFLPTIISTPNPNNYYSEPALNPIEACWRSNPNWAANRQALADCAVGFGSDATGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQTEPLWIVFATDMAITLKRELMVNSFKTIDGRGAKVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRRESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYLTQHDKVILLGHNDDFTDDRIMKVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPDDSLSKQVTKREVYANGWKKWKWRSSNDVFLNGAYFVPSGSGSCKPFYTQAQAFAVAHGSLAPLLTETAGTLSCVLGKPC 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37361596 37364554 + CePI673135_04g018820.1 Cec04g1882 201364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1882 377 Gene3D - 29 370 IPR012334 -
Cec04g1882 377 SMART amb_all 103 300 IPR002022 -
Cec04g1882 377 Pfam Pectate lyase 110 294 IPR002022 -
Cec04g1882 377 PRINTS Pollen allergen Amb family signature 175 196 IPR018082 -
Cec04g1882 377 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Cec04g1882 377 PRINTS Pollen allergen Amb family signature 348 371 IPR018082 -
Cec04g1882 377 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
Cec04g1882 377 PRINTS Pollen allergen Amb family signature 75 100 IPR018082 -
Cec04g1882 377 PRINTS Pollen allergen Amb family signature 255 274 IPR018082 -
Cec04g1882 377 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Cec04g1882 377 PRINTS Pollen allergen Amb family signature 111 127 IPR018082 -
Cec04g1882 377 PANTHER PECTATE LYASE 18-RELATED 19 373 IPR045032 GO:0030570(InterPro)
Cec04g1882 377 SUPERFAMILY Pectin lyase-like 30 368 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1882 Cec-Chr4:37361596 Cec09g2059 Cec-Chr9:37643072 5.70E-122 dispersed
Cec03g0436 Cec-Chr3:4737919 Cec04g1882 Cec-Chr4:37361596 2.00E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1882 K01728 - csv:101210816 701.819