Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1884 ATGGACAAAGGATGGGGTCTAACCCTCCGTGATTCTGATCAGTCAATTGGGTTCTTCTCAAACAAGCCACCACCACCGCCGACCACTGTCAATTCCTTTCAAAGAATGTTTCAAGGTTTAGAATTCCCCGGAAAACTTGGCCGGACTGACGACACCGACGCCACTCCGTCTCTAGCCGACGAGAATCGGCTGGCCGTCAACGAGGTGGACTTTTTCTCCGATAAGAAAAGAGTGGTTGATGATCGGGAGGATCAAGACTCTAAACCTTCCACTAATATTATCGCCACCACCGCTATCAATAAAGACGATAAGCCTTTTACCGCTCCCAGAACTTCCTTCAATCTTGTTAACACTGGGTTGCATCTGTTAACTGCTAACACTGGAAGCGATCAATCAACGGTGGATGATGGAATTTCTTCAGATGGTGAAGATAAACGAGCCAAAAACGAGCTAGCGCAACTTCAAGTGGAGCTTCAGCGTATGAACGCTGAGAATCACAAGCTTAGAGACATGCTAAGCCATGTGAGCAACAACTATAGTTCTTTACAAATGCATCTCTTGACCTTAATGCAACAGCAACAACAAAATCAGGCTTCCGAACCCGCTCATGAACGAGAGATTGGGGAGAAGAAATCAACGGAAATAAAACATGAAGTTGGAAGGGTAATGGTACCAAGACAATTTATGGATCTAGGACCAAGTGGGAACAACAACAACAACAACACGGGTGAAAGCGATGAAATATTATGTAATTCCTCGTCGGATGAAAGAACTCGTTCTGGGTCTCCATTGAACAACAACAATACCACCGAAACAGCCTCCAAAAAAAGAGATCACGCGGAAATCACGACTCCTTCCGATCACGAAAATTCCAAAAGACCCAACGCCAGAGAAGAAAGCCCCGAATCAGAATCTCAAGGTTGGGGTGGTCCGAACCATAAGCCCCCTCGGTTCAACTCTTCAAAACCACTTGACCAATCAACCGAAGCCACCATGCGTAAAGCCCGTGTCTCAGTCCGTGCTCGATCCGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAAAAAATGGCTAAAGGAAACCCATGTCCACGAGCCTATTATCGCTGCACAATGGCCGTGGGTTGCCCAGTTCGCAAACAAGTCCAACGTTGTGCTGAAGATAGGAGTATATTGATAACAACTTACGAAGGCAACCACAACCATCCACTTCCGCCGGCAGCGATGGCCATGGCGTCAACTACGACGGCGGCGGCGACCATGTTGTTATCAGGGTCTATGTCAAGTGCAGACCATAATTTAATGAACCCAAATTTACTGGCTCGAGCCATACTTCCATGTTCTTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACTCCAAACCCATTACAGTTTCAAAGGCCCGCAGCGACGCCTTTCCACGTGCCATTCCCCGGCGGACAACCACCGTCGGCCGCCGTTGCCGCCCAGTTGCCTCAAGTTTTGGGGCAAGCGTTGTATAACAATCAATCAAAATTCTCGGGGCTACAGCTTTCTCATGAGATGGGAGCTAATTCCTCTCATTTGGGTCATCACCAAATTACACAACCGGCGACTCCGGCCCAGCCTGGTGGTGCTTCTTTTGCTGACACGTTGAGTGCCGCCACCGCCGCTATTACCGCCGATCCTAATTTCACCGCCGCTCTCGCCGCCGCTATCTCCTCCATCATCGGTGGAGCTCATTCGAATAATAATAGCAATACAAATACCACCAATAATACTACAACAACAAACAACAACAACGGAAGCAGCAACAACAGCAAAATTAGCAGCTTCCCTGGAAATTAA 1872 47.92 MDKGWGLTLRDSDQSIGFFSNKPPPPPTTVNSFQRMFQGLEFPGKLGRTDDTDATPSLADENRLAVNEVDFFSDKKRVVDDREDQDSKPSTNIIATTAINKDDKPFTAPRTSFNLVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVSNNYSSLQMHLLTLMQQQQQNQASEPAHEREIGEKKSTEIKHEVGRVMVPRQFMDLGPSGNNNNNNTGESDEILCNSSSDERTRSGSPLNNNNTTETASKKRDHAEITTPSDHENSKRPNAREESPESESQGWGGPNHKPPRFNSSKPLDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTTAAATMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAATPFHVPFPGGQPPSAAVAAQLPQVLGQALYNNQSKFSGLQLSHEMGANSSHLGHHQITQPATPAQPGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNSNTNTTNNTTTTNNNNGSSNNSKISSFPGN 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37382114 37384489 + CePI673135_04g018840.1 Cec04g1884 201366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1884 623 MobiDBLite consensus disorder prediction 231 271 - -
Cec04g1884 623 Pfam WRKY DNA -binding domain 350 407 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1884 623 Coils Coil 144 178 - -
Cec04g1884 623 MobiDBLite consensus disorder prediction 272 300 - -
Cec04g1884 623 SMART WRKY_cls 348 408 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1884 623 Gene3D WRKY domain 333 410 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1884 623 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 133 592 IPR044810 GO:0003700(InterPro)
Cec04g1884 623 MobiDBLite consensus disorder prediction 587 623 - -
Cec04g1884 623 MobiDBLite consensus disorder prediction 533 550 - -
Cec04g1884 623 MobiDBLite consensus disorder prediction 319 333 - -
Cec04g1884 623 MobiDBLite consensus disorder prediction 202 223 - -
Cec04g1884 623 MobiDBLite consensus disorder prediction 533 554 - -
Cec04g1884 623 MobiDBLite consensus disorder prediction 191 338 - -
Cec04g1884 623 FunFam probable WRKY transcription factor 31 333 410 - -
Cec04g1884 623 SUPERFAMILY WRKY DNA-binding domain 341 409 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g1884 623 ProSiteProfiles WRKY domain profile. 343 409 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1884 Cec-Chr4:37382114 Cec05g1163 Cec-Chr5:10549420 3.40E-39 dispersed
Cec02g0213 Cec-Chr2:2062376 Cec04g1884 Cec-Chr4:37382114 1.30E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29411 PF03106 WRKY 3.60E-24 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1884 - - - 0.0