Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1896 ATGGGGAAGAAGAAGCTGAGCCTGCAAAATCAAGGCTCTCATGTTATATTAGACAATGGATTGTTGAAGGTGACGATATCAAACCCGCAAGGGTATGTAACTGGCATCATGTATGGGGGCATGGACAATCTGTTAGATGTAAAATCAAGCGAGTCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAAGACAGATACCAATTGCCCAAGGGATCTGAATTCAATGTCATCAACACAAGTGATGACACGATTGAGATATCATTCAGGAGAGTTTTCAACCAGTCAACTCAAGGCAACAAACTCCCGCTTGCTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCATCAGAAGGTCGGGCTTTCGATCTTGCTCAGACAAGAATGGTGTTTAAACTGCGACAAGAGAAGTTCCATTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCATCCAGGCAGAGGTGAACAACTAATTGTACCTGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCGATGGATAACAAAGATGGAGGGGTTCATGGATGGATAAGTTCCAGCCCAAACAACATAGGTTTTTGGATAGTTTTTCCAAGCCACGAGTTCCGAAATGGAGGTCCTACGAAGCAAAATCTGACAGTCCATACCGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGGGAAGATATACTCACACATATTAAGGAGGGAGAAACATGGAGAAAGGTCTTTGGTCCTATTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATTTATGGATAGATGCAAAAGAACAGAGAGTGCTAGAGGAAACAGCATGGCCGTACAGTTTTGTCTCTTCATCTTTTTATTTCATGGCAAATGAACGTGGTTCCATTTCAGGAAGACTATTAGTCCAAGACAGGTTTATTTCAAGTTCCCCCATCCCTGCGAGAGATGCACATATTGGTTTATCCGCTGCTAGAGAAGAAGGTGCCTGGCAAACAGAAAGCAAGGAATATCAATTTTGGGTAAAAACAGATTCCAAAGGAGATTTCACTATCAGAAACATTATTCCTGGAGTCTTTGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAACTGTATCTGCAGGATCTCATACCCATCTTGGAATTCTGACCTATAGTCCTCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTATCCTGACCGTACAGCTAATAGTTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGCTATTCGTTCACAGCCCAGAAAAGTTCAGGCAATATGGTTTGTGGGAGGGATACACTGATTTATATCCAATAAATGACCAAGTTTTCACCGTGGGTATCAATGATCCGAAAAAAGACTGGTTCTTTGCTCAAGTTTGCAGAGGAGGGGAAGATGGTAAGTATGTTGCGGCAACATGGACTATTAAGTTCAACATGACATCCTTAAGTGATGGAACTTACCGGCTGAGGTTGGCCATTGCATCTGCAACACGCTCGGACTTGAAGATTAATGTCAACTCAATGGGGTCGGAGTCGTCTCTGGTCTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGTCGACATGGAATTCATGGACTGTATCGAATTTATAGTATCGACATTCCATCTTCACTGCTTGTTAAGGGAGATAACTCCATATTTCTCACGCAGGCAAGGAATGGAGATCCACTCTGTGGAGTTTTATACGATTATTTAAGATTGGAAGCTCCTGATACTCCATGA 1908 42.3 MGKKKLSLQNQGSHVILDNGLLKVTISNPQGYVTGIMYGGMDNLLDVKSSESKRGYWDINWSWPGGKDRYQLPKGSEFNVINTSDDTIEISFRRVFNQSTQGNKLPLAVDIRYIMRTGIPGFYCYAIYEHPSEGRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLHPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGVHGWISSSPNNIGFWIVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGETWRKVFGPILVYLNSTSDVSEAHNLWIDAKEQRVLEETAWPYSFVSSSFYFMANERGSISGRLLVQDRFISSSPIPARDAHIGLSAAREEGAWQTESKEYQFWVKTDSKGDFTIRNIIPGVFGLHGWVPGFIGDYLHKSLVTVSAGSHTHLGILTYSPLRDGPTLWEIGYPDRTANSFYVPDVNPMYVNKLFVHSPEKFRQYGLWEGYTDLYPINDQVFTVGINDPKKDWFFAQVCRGGEDGKYVAATWTIKFNMTSLSDGTYRLRLAIASATRSDLKINVNSMGSESSLVFQLMNLGMDNTVCRHGIHGLYRIYSIDIPSSLLVKGDNSIFLTQARNGDPLCGVLYDYLRLEAPDTP 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37448438 37452017 + CePI673135_04g018960.1 Cec04g1896 201378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1896 635 CDD RGL4_C 443 630 - -
Cec04g1896 635 CDD RGL4_M 332 429 IPR029413 -
Cec04g1896 635 Gene3D - 439 629 - -
Cec04g1896 635 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
Cec04g1896 635 CDD RGL4_N 6 299 - -
Cec04g1896 635 Pfam Polysaccharide lyase family 4, domain II 357 427 IPR029413 -
Cec04g1896 635 SUPERFAMILY Galactose-binding domain-like 438 630 IPR008979 -
Cec04g1896 635 SUPERFAMILY Galactose mutarotase-like 8 294 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cec04g1896 635 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
Cec04g1896 635 SUPERFAMILY Starch-binding domain-like 327 430 IPR013784 GO:0030246(InterPro)
Cec04g1896 635 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 633 IPR051850 -
Cec04g1896 635 Gene3D - 329 431 - -
Cec04g1896 635 Gene3D - 6 303 IPR014718 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1896 Cec-Chr4:37448438 Cec11g1529 Cec-Chr11:29542643 1.80E-197 dispersed
Cec04g1896 Cec-Chr4:37448438 Cec08g1183 Cec-Chr8:23723706 3.60E-201 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1896 K18195 - csv:101220336 1231.47