Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1906 ATGGCTTGCTCAAACTTCACAATGTGGGTGTCCTCAAAACCGTCTTCATCCGATGCCTCCGCTCTTTCTTTTGGGCCTTTTAATCCTCTTCAACTTCCTTCGCAAGGCTCTGCCTCGCGATCCTCATCTGTTACTCCGATTCAGTGCGGCCTCCGTGAGCTTCGAGAACGGATTGATTCAGTGAAGAACACCCAGAAAATTACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTGCGTAGAGCACAAGAAGCTGTTGTTAATGGAAGACCATTCTCGGAGTCTCTAGTTGAAGATCTTTACAATATCAACGAGCAGCTCCAAACCGAAGATATAGATGTTCCTCTCACAAAAGTCCGACCAGTCAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGAGGCCTTTGCGGCAGTTTTAATAACATGATCATCAAAAAGGCAGAATCCAGAATCGCAGAATTGAAGACCCTTGGCCTTGATTATACAGTTATTAGCGTCGGCAAGAAGGGGAATTCGTATTTCCTTCGCCGGCCTTACATCCCAGTAGATAGATTTCTTGAGGGCGGTTCACTTCCAACAGCTAAAGAAGCTCAAGCCATTGCAGACGATGTTTTTTCCCTCTTTATTAGCGAGGAGGTCGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTAGTTAAATCAGACCCTGTGATCCACACTCTGCTTCCATTGTCACCTAAAGGAGAGATTTGTGATATTAATGGTGTATGTGTTGATGCCGCAGAGGACGAGTTCTTCAGATTGACGACAAAAGAAGGAAAATTGACCGTAGAGAGAGATGCAGTGAGGACAAAAACCACAGATTTCTCCCCAATTTTACAGTTTGAGCAGGACCCAGTTCAGATTCTTGATGCTTTATTACCTCTGTATTTGAACAGTCAAATTTTGAGGTCATTGCAGGAATCATTAGCTAGTGAACTTGCGGCCAGAATGAGTGCCATGAGCAATGCAACTGATAATGCAAGCGAGTTGAAGAAGACACTCTCTATTGTTTACAACAGACAGCGGCAAGCAAAAATCACCGGCGAGATTTTGGAGATTGTTGCTGGTGCCAACGCTTTAACTTGA 1116 44.44 MACSNFTMWVSSKPSSSDASALSFGPFNPLQLPSQGSASRSSSVTPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEDLYNINEQLQTEDIDVPLTKVRPVKKVALIVVTGDRGLCGSFNNMIIKKAESRIAELKTLGLDYTVISVGKKGNSYFLRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTTDFSPILQFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37502334 37503449 - CePI673135_04g019060.1 Cec04g1906 201388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1906 371 Pfam ATP synthase 51 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec04g1906 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 115 - -
Cec04g1906 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 269 370 - -
Cec04g1906 371 Gene3D - 116 241 - -
Cec04g1906 371 Coils Coil 51 71 - -
Cec04g1906 371 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 370 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec04g1906 371 FunFam ATP synthase gamma chain, chloroplastic 118 241 - -
Cec04g1906 371 FunFam ATP synthase gamma chain, chloroplastic 49 116 - -
Cec04g1906 371 CDD F1-ATPase_gamma 51 367 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec04g1906 371 Hamap ATP synthase gamma chain [atpG]. 48 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec04g1906 371 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Cec04g1906 371 FunFam ATP synthase gamma chain, chloroplastic 267 370 - -
Cec04g1906 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1 370 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cec04g1906 371 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec04g1906 371 PRINTS ATP synthase gamma subunit signature 215 232 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec04g1906 371 PRINTS ATP synthase gamma subunit signature 122 141 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec04g1906 371 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cec04g1906 371 NCBIfam ATP synthase F1 subunit gamma 50 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0515 Cec-Chr10:6215625 Cec04g1906 Cec-Chr4:37502334 5.20E-101 wgd
Cec03g0453 Cec-Chr3:4882297 Cec04g1906 Cec-Chr4:37502334 5.10E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1906 K02115 - csv:101218747 671.389