Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1920 ATGATTTCTTCACTGAGGCTTACATCTTCCAATTACACTTCCTCTGAAATTTTGAACAGAAAATCTCCAGTTCTGAGGCCGAATCTTCCATTGCAGTCCCCGGATTGCAGTGCCCTTAAACATGTCGATCGGTCTCTTTCTACCAACAAACCACTTCACATCTCGTCCGTTGAAAAACTTTCTTTGCCCACAAAATCATTGGAGCGTTCGACGGTGTGCATGGCTTATGAGGCCGAATCGCGGCCTCTGCAGATTAACATTGAGCTTCCTGATGAACAAACGGCTCAGAAACTCAAAATTGGACTCTATTTCGCCACTTGGTGGGCTTTGAATGTGGTGTTCAATGTCTACAACAAGAAGGTTCTTAATGCCTTCCCTTATCCTTGGCTCACTTCCACTCTCTCCCTCGCCGCTGGATCGCTCATGATGCTCGTTTCTTGGGCGACTCGAATGGTCGATGCTCCCAAAACCGATTTAGATTTCTGGAAATCCCTATTTCCGGTCGCAGTGGCACATACGATTGGGCATGTTGCAGCAACTGTGAGCATGTCCAAAGTTGCAGTCTCATTCACTCACATAATCAAGAGTGGGGAGCCGGCTTTTAGCGTGCTGGTCTCTAGGTTTCTGTTGGGTGAGATGTTTCCATTGCCTGTTTACTTATCTCTTATCCCAATCATCGGAGGGTGCGCTCTTTCCGCCATTACTGAGCTCAATTTCAACATGATTGGTTTCTCGGGAGCGATGGTATCGAACTTGGCATTTGTGTTTAGAAACATATTTTCGAAGAAAGGGATGAAGGGAAAGTCAGTTAGTGGGATGAATTACTATGCTTGCCTCTCGTTGCTCTCTCTGCTAATTCTTACTCCTTTCGCCATTGCTGTGGAGGGACCCAAGTTGTGGGCTGAAGGATTCCAAAAGGCTCTCTCTCAAATTGGTCCCAATTTCATTTGGTGGTTGGGAGCTCAAAGTATGTTCTATCACTTGTACAATCAAGTGTCTTACATGTCTCTTGATCAGATATCGCCATTGACATTCAGCGTTGGTAACACAATGAAGAGAATATTCGTAATAGTATCGTCCATTATCATCTTCCACACGCCTATCGGACCCGTAAACGCCATTGGAGCTGCCATTGCAATCCTTGGAACGTTCCTCTACTCGCAGGCAAAGCTGTGA 1176 45.83 MISSLRLTSSNYTSSEILNRKSPVLRPNLPLQSPDCSALKHVDRSLSTNKPLHISSVEKLSLPTKSLERSTVCMAYEAESRPLQINIELPDEQTAQKLKIGLYFATWWALNVVFNVYNKKVLNAFPYPWLTSTLSLAAGSLMMLVSWATRMVDAPKTDLDFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEMFPLPVYLSLIPIIGGCALSAITELNFNMIGFSGAMVSNLAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAIAVEGPKLWAEGFQKALSQIGPNFIWWLGAQSMFYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIIIFHTPIGPVNAIGAAIAILGTFLYSQAKL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37587002 37588868 - CePI673135_04g019200.1 Cec04g1920 201402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1920 391 Pfam Triose-phosphate Transporter family 98 387 IPR004853 -
Cec04g1920 391 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 98 390 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cec04g1920 391 PANTHER SOLUTE CARRIER FAMILY 35 96 390 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Cec04g1920 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 284 388 - -
Cec04g1920 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 140 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1920 Cec-Chr4:37587002 Cec05g1631 Cec-Chr5:26008810 1.50E-154 dispersed
Cec04g2033 Cec-Chr4:38445239 Cec04g1920 Cec-Chr4:37587002 4.40E-63 transposed
Cec05g2595 Cec-Chr5:36826736 Cec04g1920 Cec-Chr4:37587002 3.20E-65 transposed
Cec10g0534 Cec-Chr10:6427648 Cec04g1920 Cec-Chr4:37587002 1.00E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1920 K15283 - csv:101216621 681.789