Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1921 ATGTTCGACCCAGATATGTTTGATACTCACCATCATATGCTTGAGGAGTTGGAAAATATGAGAGATGATGATTTCGAGACCAAATCTGGCGCAGAAATCTTAGAACCTGCTTGTGGAACTGACCAACAACGCTCCAAGAAGAAACGTTACAATCGCCATACACAACATCAAATCCAAGAAATGGAAGCATTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAGAGGATGGAGCTGAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTTAAGTTTTGGTTTCAAAACAAACGCACCCAGATGAAGGCTCAACACGAGAGGCACGAAAACACAATTTTGAAGGCAGAAAATGAGAAGCTTCGTGCTGAGAATATCCGTTATAGAGAAGCATTCGCCCATTCAACTTGCCCTAACTGCGGCTCTTCCTCCACTGCCCTCGGCGAAATGTCCTTTGACGACCAACATTTGCGCATTGAAAATTCCCGCTTGCGAGATGAGATCGAGCGAATGAGTGGATATGGGTCGAAATGCACAAAGCCGTACTACCAGCTTCCGACGAATGCTCCGACGCGATCTCTGGAGTTGGGCATCACAAATTTCGGTGCACAGTCGTCGGGATTCGTGGGAGAGATGTACGGAGCGGCGGACTTTTTCCGGTCGATATCGAGGCCTTCGGAAGGCGAGAAACCGGTGATCGTTGAGCTGGCGGTTTCGGGGATGGAGGAATTGAGGAGAATGGCTCAGGGCGGGGAGCCGTTGTGGATTGCGGGTGATGGGAAGTCGTCGAGCGAAGTGGTTCTTAACGAAGCGGAGTATTTGAGCAGTTTCGGAGGCGGAATTGGGGGAAAGCCCATGGGCTTTAGAACTGAGGCTTCAAGAGTTTCGGCTATTGTGTTCATGAACCATATGAAGCTGGTGGATATTTTCATGGATGCTACGCAATGGTCAACCGTGTTCTGCGGCATTGTTTCGAGAGCATCCACTGTGGAAATCCTTTCGCCTGGCCTACCAGGAAACTTCAACGGGGCCTTGCATGTGATGAGCGCTGAATTCCAAGTCCCATCGCCCCTTGTTCCGACTCGTGAAAACTACTTCGTAAGATACTGCAAACAACAAAGCGATGGATTATGGGCGGTGGCTGATGTTTCCTTAGACACCTTACGCCCTTCTCTCATCCCTAACACCCGAAGAAGACCCTCTGGTTGCTTAATTCAAGAATTGCCCAACGGCTACTCAAAGATCACTTGGGTCGAACATGTAGAGGTCGACGAAACTGGCGTCCCCACAATGTACAGACCCCTCGTTAACTCCGGCCTCGCTTTCGGGGCTAAGCGATGGGTCGCGGCCTTGGATCGCCAATCTGAGCGCTTCGCCACTTCAATCGCCACCACCATTCCCACCGGCGATTTACGCGTTATATCGAGTATTGAAGGCAGGAAGAGTATGCTGAAGCTAGCGGAGAGAATGGTGACTAGCTTCTGCGCCGGTGTCGGCGCGTCGAGTGTACACGCTTGGACGGCGTTACCTGCAGCTGCCGGCGATGAGGTTCGTGTTGTGACGAGGAAAAGCACCGACGAACCAGGGAGACCACCCGGCGTTGTACTGAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCACCTAAGGTCGTGTTTGATTTCCTCCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGGGGATTAGTTCAGGAAATGGCTCACATAGCCAACGGCCGCCACTCCGGGAATTGTGTCTCCTTGCTTCGTGTCAACAGTGCCAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTCGACGGGATCGTACGTTATTTATGCTCCGGTGGACACCGTTGCCATGAACGTGGTGCTAAGCGGTTGCGATCCGGATTACGTGGCACTTCTACCGTCGGGATTCGCCATACTTCCAGACGGACCCGGCGGAGGAGGCAACAACGGCGACGGAATTCTTGAGCTGGGATCCGGTGGGTCACTCATCACAGTTGCATTTCAAATCCTGGTTGATTCAGTTCCGACGGCTAGACTTTCAATTGGATCAGTGGCCACCGTGAACAGTCTGATCAAATGCACGGTTGAGAGGATCAGAGCCGCTGTGATGCGCGAAAACCCATGA 2157 51.83 MFDPDMFDTHHHMLEELENMRDDDFETKSGAEILEPACGTDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENTILKAENEKLRAENIRYREAFAHSTCPNCGSSSTALGEMSFDDQHLRIENSRLRDEIERMSGYGSKCTKPYYQLPTNAPTRSLELGITNFGAQSSGFVGEMYGAADFFRSISRPSEGEKPVIVELAVSGMEELRRMAQGGEPLWIAGDGKSSSEVVLNEAEYLSSFGGGIGGKPMGFRTEASRVSAIVFMNHMKLVDIFMDATQWSTVFCGIVSRASTVEILSPGLPGNFNGALHVMSAEFQVPSPLVPTRENYFVRYCKQQSDGLWAVADVSLDTLRPSLIPNTRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVNSGLAFGAKRWVAALDRQSERFATSIATTIPTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAAGDEVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGGGNNGDGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37595892 37602537 - CePI673135_04g019210.1 Cec04g1921 201403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1921 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 41 713 IPR042160 -
Cec04g1921 718 SUPERFAMILY Bet v1-like 478 710 - -
Cec04g1921 718 Gene3D - 36 120 - -
Cec04g1921 718 Gene3D - 285 457 IPR023393 -
Cec04g1921 718 MobiDBLite consensus disorder prediction 29 54 - -
Cec04g1921 718 CDD START_ArGLABRA2_like 229 455 - -
Cec04g1921 718 FunFam Homeobox-leucine zipper protein HDG1 36 120 - -
Cec04g1921 718 Coils Coil 98 130 - -
Cec04g1921 718 ProSiteProfiles START domain profile. 225 459 IPR002913 GO:0008289(InterPro)
Cec04g1921 718 SMART HOX_1 45 108 IPR001356 GO:0003677(InterPro)
Cec04g1921 718 SUPERFAMILY Bet v1-like 228 457 - -
Cec04g1921 718 CDD homeodomain 46 105 IPR001356 GO:0003677(InterPro)
Cec04g1921 718 Pfam Homeodomain 47 102 IPR001356 GO:0003677(InterPro)
Cec04g1921 718 Pfam START domain 236 455 IPR002913 GO:0008289(InterPro)
Cec04g1921 718 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677(InterPro)
Cec04g1921 718 FunFam Homeobox-leucine zipper protein GLABRA 2 234 455 - -
Cec04g1921 718 SMART START_1 234 456 IPR002913 GO:0008289(InterPro)
Cec04g1921 718 SUPERFAMILY Homeodomain-like 36 104 IPR009057 -
Cec04g1921 718 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0890 Cec-Chr2:11270026 Cec04g1921 Cec-Chr4:37595892 1.30E-263 dispersed
Cec04g1921 Cec-Chr4:37595892 Cec06g0005 Cec-Chr6:119486 1.30E-191 dispersed
Cec02g0192 Cec-Chr2:1809795 Cec04g1921 Cec-Chr4:37595892 7.70E-256 wgd
Cec03g0473 Cec-Chr3:5045051 Cec04g1921 Cec-Chr4:37595892 4.10E-257 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29413 PF01852 START 3.10E-46 CL0209 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1921 K09338 - csv:101209093 1364.75