Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1923 ATGGCTACCCATCAGCCACTTCTTCTTCAACCCCCCAAAACTCCCCGATCCAAAACCTTCCCAATAATCCTCTGTTTGGCTGCTCTTTTGTGCTCAGCCATTTTCATTAACAACAAATTCATCAAATCAAACCCATCTGAAAATGATCTACCCTTCCTTTACAACATATGCCACAAGGCATACAACCCATCATCCTGCATTCAAATGGCCGCCTCAGAATCTCCCTTTCCTCAAGAAATCAAAACCACGAACGGGGCTCATTTCTTACATTCTTTCTTGAGGAAATCCATTCCCAAAGTAATTAACACAATCGAGAAAGCCAAAGATCTCAGCCAAAGAATCAACAACCCTCGCGGTGAAGCAGCTTTAGCCGATTGTGTCGAGCTTATGGAGATCTCAAACGGCCGACTCATGGACTCTGTTTTGGCTCTGAAGAACAGAACAAGCGGTTCTATCGAAAATGCCCACACATGGCTGAGTAGCGTGCTGACAAACCACATCACGTGCTGGGATGAGATCGAGAATTCAGTATCCAGAGCCGCGGCCATGGATTTAGGACTTCAAGAGTTGATTATGAGAGGGAGAAATGTGTTGGGGATGTTTGTTTCTGTTTGGGGATCGAAAATTGGAAATCTGGGGGAGTTGGGGAAAAGGGAAAATGCGTATCCGAGTTGGTTGAAGAAAGGGGATCGGACATTGTTGGGGTTTTCGGGGAGAGAAATGCAAGCGAATATCGTGGTGGCAAAGGATGGGAGTGGGAATTTCAAGACAGTGAAGGAGGCGGTTGAAGCAGTACCAGATAAGAGCAAGAACAGAGTTGTTATATATGTGAAGAAGGGGATATATAAGGAAAATGTGGAAGTGGGAAAGAAGAAAAAGAATGTAATAATCGTTGGAGATGGAATGGATTCCACCATTATCACCGGTAGCCTCAACGTCGTTGATGGATCAACAACTTTCAACTCTGCAACTGTAGCTGCGGTGGGAGATGGATTTATAGCCCAAGACATTTGGTTCCAAAACACAGCCGGACCGGAAAAGCACCAAGCAGTCGCACTTCGGGTCGGAGCAGATCAATCCGTCATAAACCGGTGTCGTATCGACGCTTATCAAGACACTCTCTACGCACATTCGAACCGTCAATTCTACCGAGATTCCACCATCACCGGCACCGTCGACTTCATATTCGGTAACGCCGCCGTCGTGTTACAGAACTGTAAAATTGAGCCCCGACGGCCGATGAGCAACCAAGCGAACATGGTGACGGCGCAAGGCCGAATCGACCCAAATCAGAACACTGGAACTTCGATCCAGAAATGCCAAATCGTGGCAAGCTCCGACTTGGAGCCCGTTAAGGGGTCGATTAAGACGTATTTGGGGCGCCCATGGAAGGAGTTTTCGAGGACCGTCGTGATGCAGTCCAGAATTGGCGATCTTATTAATCCAGCGGGCTGGGCCGAGTGGAGTGGGGACTTTGCATTGAAGACGCTCTATTACGGGGAGTATTTAAATAATGGGCCGGGCTCTGATGTTAGCAAGCGAGTGAAGTGGGCCGGTTACCATGTCATTACGAACCCATCTGAGGCCCAAAAATTCACGGTGGATTCACTTATACAAGGAGGCCAATGGCTGGGCCCCTCAGGCGCGACTTTTATCCCAGGGCTGTGA 1668 48.14 MATHQPLLLQPPKTPRSKTFPIILCLAALLCSAIFINNKFIKSNPSENDLPFLYNICHKAYNPSSCIQMAASESPFPQEIKTTNGAHFLHSFLRKSIPKVINTIEKAKDLSQRINNPRGEAALADCVELMEISNGRLMDSVLALKNRTSGSIENAHTWLSSVLTNHITCWDEIENSVSRAAAMDLGLQELIMRGRNVLGMFVSVWGSKIGNLGELGKRENAYPSWLKKGDRTLLGFSGREMQANIVVAKDGSGNFKTVKEAVEAVPDKSKNRVVIYVKKGIYKENVEVGKKKKNVIIVGDGMDSTIITGSLNVVDGSTTFNSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYAHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRIDPNQNTGTSIQKCQIVASSDLEPVKGSIKTYLGRPWKEFSRTVVMQSRIGDLINPAGWAEWSGDFALKTLYYGEYLNNGPGSDVSKRVKWAGYHVITNPSEAQKFTVDSLIQGGQWLGPSGATFIPGL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37622944 37624699 - CePI673135_04g019230.1 Cec04g1923 201405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1923 555 Gene3D - 238 555 IPR012334 -
Cec04g1923 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cec04g1923 555 NCBIfam pectinesterase inhibitor domain 25 173 IPR006501 GO:0004857(InterPro)
Cec04g1923 555 CDD PMEI-like_4 57 204 - -
Cec04g1923 555 SMART PMEI_2 48 200 IPR006501 GO:0004857(InterPro)
Cec04g1923 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 176 IPR035513 -
Cec04g1923 555 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
Cec04g1923 555 SUPERFAMILY Pectin lyase-like 241 554 IPR011050 -
Cec04g1923 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 202 IPR035513 -
Cec04g1923 555 Pfam Plant invertase/pectin methylesterase inhibitor 53 176 IPR006501 GO:0004857(InterPro)
Cec04g1923 555 FunFam Pectinesterase 238 555 - -
Cec04g1923 555 Pfam Pectinesterase 244 540 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec04g1923 555 PANTHER PECTINESTERASE 24 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1923 Cec-Chr4:37622944 Cec09g0545 Cec-Chr9:4700357 5.10E-119 dispersed
Cec04g1923 Cec-Chr4:37622944 Cec09g0142 Cec-Chr9:1250167 1.50E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1923 K01051 - csv:101216377 962.985