Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1937 ATGATGACTCGATCTTTTCTACTGCAAATAAATGCTGAAAATTACATCGAAACAAGTGGCTCCAAACGGTTTCCTCTGAATAATTGTACAACGAAAGGCATTAGAGATATTTCAATCATCTGTTTTTATCTCTTCAAGAAAAAGGTCGTCTCTTTATCTGTGCTACCCCAAACCAAAATCATGTTCTGTTTCCTCGATTACAGATCTTTGCCAATTTCGTTGCTACTTCTAATTTCAATCCTTGGGCTCAGCCGCTCCCATCATTTCGAACCAAAATATAGGTTCCACATCTGTTCAGCGCCAAGTGATAACACAACCAATTCTAATCAGGGTTCGGACCTCAATGGCCTGCTGAGTTCCCTATCAGAAGCTTCGTCGGACAGCTTCTACAACAGAACTTTCAATGGAATATACGGCCTCGTCCTTTGCCGAGGCGATATTAACAGCGATAACTGTCACAGTTGTGTCAGTGCTGCAAGCAAAGAATTAAGGGATCGATGCCCTTTAAGAGTTAACGCCACAATATGGTACGATGAGTGTATGCTGAGATACTCAGACAAGAACTTCTTGGGGACTGTAGAGATATTGCCGAGATTCCTTATGGGCGATTCTGGGAACCAGACATCACCAGATGATCGGAAAATTGACGGGCCTGATCTATTGTCTCAGATGGCCAGTGAAGCTGCAGAGATAGAGATGATGTTCAAGGCAAACAAGTTGGATAACCGTGGGACACGCTATGGATTGGTTCAGTGCACAAGGGATCTCAACAGTAGCGAGTGTTTTACATGTTTGACGGCTCTGCTGGAGGAGATCAAGCAGGTTTACAAAGGGAGAGTGGGGTGGAGAATTTTGGGCCCAAGTTGTAGCGTAACGTATGAGCAATATCTTTTCTATCAGCTACCAGCTTCGTGTCAAGGATTAAGCGCGAAAATGATTGTAGCAATCACTATATCGACAGTTGCAGCAGTAGCAATTCTTGCAAGTCTATCGTATTGTTTACTTTTGTCAAAGAAGAGACGACAGGAGATGGACACAGGCGAACAAGTTCTGTTGCGAAATTTGGGAGATGCGAAGTCCGCAGAATTGATGAAGCAAGACTTGCATTCACGAGATAGAGACAATGATGAAGAAATGCATTACTTCAGTTTCACCACTCTACAGGCTGCCACAAACAACTTTGCAGATGCAAATAGACTTGGAGAAGGTGGTTTTGGTCCGGTTTTCAAGGGAAAGTTGATGAATGGGGAAGAAATAGCTGTAAAAAGACTGTCGGTTAAGTCGAGTCAAGGTCACGATGAGTTCAAGAATGAAGTCATGGTCATAATGAAGCTTCAACATAAAAATCTAGTCAGACTTCTGGGATGCTGTCTGGAGGGAGAGGAAAAGCTCCTTGTCTATGAGTACATGGCAAACACTAGTCTAGATGCCTTCCTATTTGATCCAGTTAAATGCAAACAACTCGACTGGCTTAAGCGCAACAACGTCATCAATGGAGTTGCAAAAGGAATTCTATATCTACACGAAGACTCTCGGCTCAAAATTATTCATAGGGATTTGAAAGCTAGCAATGTTTTGTTGGATGATGAGATGAATGCAAAGATATCAGACTTTGGAACGGCCAGAATTTTTGGAGGCAAACAAGTTGAGGCTAGCACCAACAGAGTTGTTGGCACTTTTGGATATATGGCACCAGAATATGCAATGGAGGGAGTGTTCTCAATAAAGTCTGATGTTTACAGTTTTGGGATTTTAATGTTAGAAGTGATAAGCGGAAGAAAGAACAGCGGTTTCTTCAAAGTAGACAATGCACAGAGCCTTCTATCACAGGCATGGCAACTATGGAAGGAAGGGAGAGAAGAGGAAATGGTTGATCCGAACCTGGTTGGAGAATGTTCTTTAAGCGAAGCTCTGAGATGGATCCAAATTGGTCTGCTGTGTGTACAAGAAGACCCTAACATCAGACCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCAAATCGATTCACCTTCCCCAACCGTCGAAACCTCCATTCTTTCCGATTGGATTTCCGATGTCCGCCGATCAATCTTCAATGACTTTACTGGGAACGGGATATCTCTCCACTCAATCGTCTACCACTGCTTCTATCTAG 2139 43.01 MMTRSFLLQINAENYIETSGSKRFPLNNCTTKGIRDISIICFYLFKKKVVSLSVLPQTKIMFCFLDYRSLPISLLLLISILGLSRSHHFEPKYRFHICSAPSDNTTNSNQGSDLNGLLSSLSEASSDSFYNRTFNGIYGLVLCRGDINSDNCHSCVSAASKELRDRCPLRVNATIWYDECMLRYSDKNFLGTVEILPRFLMGDSGNQTSPDDRKIDGPDLLSQMASEAAEIEMMFKANKLDNRGTRYGLVQCTRDLNSSECFTCLTALLEEIKQVYKGRVGWRILGPSCSVTYEQYLFYQLPASCQGLSAKMIVAITISTVAAVAILASLSYCLLLSKKRRQEMDTGEQVLLRNLGDAKSAELMKQDLHSRDRDNDEEMHYFSFTTLQAATNNFADANRLGEGGFGPVFKGKLMNGEEIAVKRLSVKSSQGHDEFKNEVMVIMKLQHKNLVRLLGCCLEGEEKLLVYEYMANTSLDAFLFDPVKCKQLDWLKRNNVINGVAKGILYLHEDSRLKIIHRDLKASNVLLDDEMNAKISDFGTARIFGGKQVEASTNRVVGTFGYMAPEYAMEGVFSIKSDVYSFGILMLEVISGRKNSGFFKVDNAQSLLSQAWQLWKEGREEEMVDPNLVGECSLSEALRWIQIGLLCVQEDPNIRPTMSMVVLMLGSKSIHLPQPSKPPFFPIGFPMSADQSSMTLLGTGYLSTQSSTTASI 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37720596 37723787 - CePI673135_04g019370.1 Cec04g1937 201419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1937 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1937 712 ProSiteProfiles Gnk2-homologous domain profile. 195 298 IPR002902 -
Cec04g1937 712 ProSiteProfiles Gnk2-homologous domain profile. 92 189 IPR002902 -
Cec04g1937 712 FunFam Uncharacterized protein 470 671 - -
Cec04g1937 712 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 358 469 - -
Cec04g1937 712 Pfam Salt stress response/antifungal 98 186 IPR002902 -
Cec04g1937 712 Pfam Salt stress response/antifungal 219 296 IPR002902 -
Cec04g1937 712 Gene3D Phosphorylase Kinase; domain 1 368 469 - -
Cec04g1937 712 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 216 681 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cec04g1937 712 Gene3D - 201 298 IPR038408 -
Cec04g1937 712 Gene3D - 91 189 IPR038408 -
Cec04g1937 712 Gene3D Transferase(Phosphotransferase) domain 1 470 672 - -
Cec04g1937 712 Pfam Protein tyrosine and serine/threonine kinase 398 662 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1937 712 ProSiteProfiles Protein kinase domain profile. 394 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1937 712 SUPERFAMILY Protein kinase-like (PK-like) 376 692 IPR011009 -
Cec04g1937 712 CDD STKc_IRAK 400 665 - -
Cec04g1937 712 SMART serkin_6 394 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1937 Cec-Chr4:37720596 Cec04g1939 Cec-Chr4:37731780 7.50E-115 dispersed
Cec04g1936 Cec-Chr4:37716546 Cec04g1937 Cec-Chr4:37720596 1.30E-34 tandem
Cec04g1937 Cec-Chr4:37720596 Cec04g1938 Cec-Chr4:37726853 5.80E-208 tandem
Cec02g0177 Cec-Chr2:1702272 Cec04g1937 Cec-Chr4:37720596 7.30E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71948 PF07714 PK_Tyr_Ser-Thr 2.50E-47 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1937 - - - 0.0