Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1938 ATGATTCTTTTCCCCATTCAAACACCTTCTCCCTTGCCTTTAACTTTACTGCTTCTGATTTCAATATCTGGATTCATAGTCCCTTGTTGTACCCAACGTTATTTATACTGCTCAGGATCCAACACGGCTCACCCCAATCTAAATTCTGACATTCGTTTCCTATTGAATTCCTTGGTCTCTCGAGCTTCTTCTCGCACTTTCTACACTGAGACCTCTAATGGAATCCATGGCCTCTTCCTCTGCCGAGGGGATCTTCCCAACGAGGCCTGTCGTACCTGCGTCGAAGGAGCTAGTCAACAAATCAAGGTCGACTGCGCATCACAAACAAACGGTACCATAGGCTTTGATGAATGCATGTTGAGATACTCAGCTGTGAACTTCTTTGGAGTCCTGGAGACAGCTCCAAGAATACTGCTATATAACAGTCTGAACCAATCTACTTTTGAAGATCGTGATTTCGTCGATCTTGCATTGGTGTCTAATTTAGTAAGAGATGCTACAAATGCAGATTTGATGTTCAAGGAAGGTGAGGTAAATGTGCAGGGGGTGGATCAGAGATTTGGATTTGCACAGTGTACAAGAGATATCATCAAGCGTGATTGTGAGGTCTGTTTGACAATTTTGGTGGATTACGCAAAGGGATGTTGCCTAAGGCAAAGAGCATGGCGAGTTTTAGCCCCCAATTGTAATTTAAGAGTTGAGGCCTTTCGTTTTTATGGGATACCAGGACCTCCATCTTTGCCACTTGATGAAGAAGGAGGGAACAGAACAAGGATCATAGTCATCAGCATACCAACAGTTGCAGCAGCGGCAATTCTGCTAGGCCTACTGTATGGCTCATTTTTATGGAGAAACAAAAGACAGGAGAGGGATAGAAGTGAAGAGCTTCCTTTGCGAAATCGGGCAGATCCCTCACTGAGGCAACATTTTGATGCAGCAAATCACGACAATGATGGAGATATGCATTACTTCAACTTTAGTACTCTAAAGGCTGCTACAGATGACTTTTCAGATGTTCATAAACTTGGAGAAGGGGGGTTTGGTCCAGTTTACAAGGGAAAGCTGATGGGTGGTGAGGAAGTAGCAGTTAAAAGACTATCAACAAAATCAAGTCAAGGACATGAAGAGTTCAAGAATGAAGCAAAGGTCATTTGGAAGCTTCAACATAAGAATCTGGTCAGGCTCTTGGGATGTTGTGTTGAAGGAGAAGAAAAGCTTTTAGTCTATGAGTACATGGCAAATACTAGTCTTGATGCTTTCTTGTTTGATCCATTGAAGTGCAAACTACTTGACTGGCTCAAGCGTGAAAACATTGTCAATGGGATTGCAAGAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCATAGAGATTTGAAAGCGAGCAATGTACTGTTAGATGAGGAGATGAATCCAAAAATATCAGACTTTGGAACTGCTAGGATATTTGGAGGCAAGCAAATTGATGCCAGCACCAATAGAATAGTTGGAACATATGGTTATATGGCACCAGAGTATGCTATGGAGGGAGTTTTCTCAGTTAAATCCGATGTATACAGTTTTGGAGTTCTTATGCTAGAAGTGACGAGTGGGAGAAAAAACATTGGCTTTCTGAACATGGACAGAACGCAGAACCTTCTGTCATATGCGTGGGAGCTATGGAGTGAAGGTAGAGCAGAAGAAATGATAGACAAGAACTTGGCTGGAGATTGTCCTGAGAGTGAGGCTGTAAAATGGATCCACATAGGGTTGTTGTGTGTGCAAGAAGATCCTGACATCAGGCCCACCATGGCAATGGTTGTTCTAATGCTTGGAAGCCAATCGATTCACCTTCCTCAGCCATCAAAACCTCCATTTCTTACAGCTAGAGGGTCTCTAAGTAGATATCAATATTCAACAACTGAAACAGGGACAAGGTTACACACCACAGATCAGTCGTCTACTACTGCTTCTATCTAG 1968 42.78 MILFPIQTPSPLPLTLLLLISISGFIVPCCTQRYLYCSGSNTAHPNLNSDIRFLLNSLVSRASSRTFYTETSNGIHGLFLCRGDLPNEACRTCVEGASQQIKVDCASQTNGTIGFDECMLRYSAVNFFGVLETAPRILLYNSLNQSTFEDRDFVDLALVSNLVRDATNADLMFKEGEVNVQGVDQRFGFAQCTRDIIKRDCEVCLTILVDYAKGCCLRQRAWRVLAPNCNLRVEAFRFYGIPGPPSLPLDEEGGNRTRIIVISIPTVAAAAILLGLLYGSFLWRNKRQERDRSEELPLRNRADPSLRQHFDAANHDNDGDMHYFNFSTLKAATDDFSDVHKLGEGGFGPVYKGKLMGGEEVAVKRLSTKSSQGHEEFKNEAKVIWKLQHKNLVRLLGCCVEGEEKLLVYEYMANTSLDAFLFDPLKCKLLDWLKRENIVNGIARGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGKQIDASTNRIVGTYGYMAPEYAMEGVFSVKSDVYSFGVLMLEVTSGRKNIGFLNMDRTQNLLSYAWELWSEGRAEEMIDKNLAGDCPESEAVKWIHIGLLCVQEDPDIRPTMAMVVLMLGSQSIHLPQPSKPPFLTARGSLSRYQYSTTETGTRLHTTDQSSTTASI 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37726853 37729678 - CePI673135_04g019380.1 Cec04g1938 201420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1938 655 ProSiteProfiles Gnk2-homologous domain profile. 29 127 IPR002902 -
Cec04g1938 655 FunFam Uncharacterized protein 412 613 - -
Cec04g1938 655 ProSiteProfiles Gnk2-homologous domain profile. 133 238 IPR002902 -
Cec04g1938 655 Gene3D Transferase(Phosphotransferase) domain 1 412 615 - -
Cec04g1938 655 Gene3D - 138 238 IPR038408 -
Cec04g1938 655 Gene3D - 30 127 IPR038408 -
Cec04g1938 655 Pfam Salt stress response/antifungal 158 234 IPR002902 -
Cec04g1938 655 Pfam Salt stress response/antifungal 37 123 IPR002902 -
Cec04g1938 655 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 155 622 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cec04g1938 655 SUPERFAMILY Protein kinase-like (PK-like) 319 636 IPR011009 -
Cec04g1938 655 SMART serkin_6 336 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1938 655 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 301 411 - -
Cec04g1938 655 ProSiteProfiles Protein kinase domain profile. 336 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1938 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1938 655 Gene3D Phosphorylase Kinase; domain 1 310 411 - -
Cec04g1938 655 CDD STKc_IRAK 342 607 - -
Cec04g1938 655 MobiDBLite consensus disorder prediction 636 655 - -
Cec04g1938 655 Pfam Protein tyrosine and serine/threonine kinase 340 604 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1938 Cec-Chr4:37726853 Cec04g1949 Cec-Chr4:37796211 2.20E-113 dispersed
Cec04g1937 Cec-Chr4:37720596 Cec04g1938 Cec-Chr4:37726853 5.80E-208 tandem
Cec04g1938 Cec-Chr4:37726853 Cec04g1939 Cec-Chr4:37731780 2.10E-116 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71949 PF07714 PK_Tyr_Ser-Thr 3.40E-49 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1938 - - - 0.0