Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1948 ATGGCGGCTCCATATCCGGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGTTCTTCAATCCAACGCTGGCTTGACGCCGGTCACCGGACTTGCCCAATCACCCAATTGCCCCTTCCTCAAAACCCTTCCCTAATCCCTAACCATGCCCTCCGAAGCTTAATTTCAAATTTCAACCCTGTTTCTCTTTCCAAGCCATATCTCCCTCATCCGCCGCCTCAAACCCTAATCTCGATTCTCATCTCTCCTTCTTCCTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCAAGGATTTCAAAGCGCGATTCCGCTATGCGTCGAAGATTGACCGAGTCCGGTGCCGTCTCGGCTGTTCTTAAATGCGTTGGTTCTGACGATCCCGGCCTCCAAGAGAAGGCTCTCTCGCTCTTGCTTAATCTCAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAGGGAGCTATTGGTCTCACCGTGGCTGCTCTTCAAGCTAGGTCCGCGGATTGCAGAGCCGTAGCAGCCACGATGCTGACCAGCTTGGCGGTTGTGGAGGTTAACAAGGCTACAATTGGGGCATACCCCTATGCAGTTCGTTCTCTGGTTTATCTCTTACGGAACGGGAATAACAGAGAGCAGAAAGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCTGGGAACCGTGTGCGGGCTGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATTGCAAACTCTGGGCTAGATAGAGCAGTGGAAGTTCTGGGGGTTTTGGCTAAGTGCAGGGAAGGTCGAGAAGAGATGCAACGGTTCAAAGGATGTGTGGAGATTTTGGGTCGTGTTTTGCGAAATGGAGGCCCAAGAGGAATTCAATATGCTCTTCTAACTCTGACTTCCCTCTGCTGCCATTGCGAGCGAGTGTGCGTGGAGGCAAGAAGAGAAGGCGTGTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGCGGAAACAACCCATGA 1098 49.91 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPYLPHPPPQTLISILISPSSSLDSKLDCLNQLARISKRDSAMRRRLTESGAVSAVLKCVGSDDPGLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGNNREQKEAATALYAICSFPGNRVRAVECGAVPILLKIANSGLDRAVEVLGVLAKCREGREEMQRFKGCVEILGRVLRNGGPRGIQYALLTLTSLCCHCERVCVEARREGVLGICMTLIDDDNEKIRANAANLIHILRGNNP 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37788375 37789472 - CePI673135_04g019480.1 Cec04g1948 201430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1948 365 SUPERFAMILY RING/U-box 3 72 - -
Cec04g1948 365 SMART arm_5 279 320 IPR000225 GO:0005515(InterPro)
Cec04g1948 365 SMART arm_5 159 199 IPR000225 GO:0005515(InterPro)
Cec04g1948 365 SMART arm_5 118 158 IPR000225 GO:0005515(InterPro)
Cec04g1948 365 SMART arm_5 200 241 IPR000225 GO:0005515(InterPro)
Cec04g1948 365 Gene3D - 269 365 IPR011989 -
Cec04g1948 365 Gene3D - 87 268 IPR011989 -
Cec04g1948 365 Pfam U-box domain 6 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec04g1948 365 PANTHER U BOX DOMAIN-CONTAINING 6 361 - -
Cec04g1948 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Cec04g1948 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec04g1948 365 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Cec04g1948 365 CDD RING-Ubox_PUB 6 53 IPR045210 -
Cec04g1948 365 SMART Ubox_2 8 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec04g1948 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1948 Cec-Chr4:37788375 Cec11g0628 Cec-Chr11:6917208 7.10E-45 dispersed
Cec04g1948 Cec-Chr4:37788375 Cec05g2753 Cec-Chr5:38021601 3.30E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1948 K27970 - csv:101213883 646.351