Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1949 ATGGGTAATAATTGCAGAAAGGTTGTTGGGTTTCTTCAATTCTTTGTCATTTCATTCTTACTCTGTTTTTCTCCTCTTTTCTGCGACGCTGCAAATTCATTTACAAAGGGAAGAGGTTTAAGAGATGGTACTAATGAAACCCTCATATCTCTGAATGAGTCCTACGAACTGGGATTCTTCAGCCCAATAAATTCTTCATCACGATACGTCGGAATATGGTATCACAAGATCGAGGAACAGTCTGTTATTTGGGTTGCGAATAGAGATAGGCCACTTCTTAACAGAGATGGGGTTTTGACAATCGGTGACGAAGGGAACTTGGTCGTTCTGGATGGCAACAACGTCTCTTTTTGGACAAGCAATATCACAGCGAATGCATTTGATCCCAGAAACTTAACTCTTCATAACCATGGAGAATTGGTTCTTACGAGCGGAGACGACTCATCGAAAGTTCTTTGGAGCAGCTTCGAACACCCCACAGATACATTTCTTCCGAATATGGAGGTGAGAGTGAACTCAGAAATTGGCGAGAAACGAATGTTTATGTCATGGAAATCAGAGACAGATCCGGCCGTGGGAAATTACTGTCTGGGTGTGGATCCTCGTGGAGCTGTACAGATTATCATTTGGAATGGGAATAATCGATGGTGGAGAAGCGGCCATTGGGATAGGCAGATTTTTTCTGGGATTCCAAATATGCGTTCTACGTCTTTGTACGGTTTCAAGATTATCCCTGAAAATGGAAATACCATTAGTGTAACTTTTCAGGCACTGAATGATTCCGATAAGCTGAAATTTCAAATCCTGTGGAATGGTAAAGAAGCACAGCAACGATTGAATGAAGCAAATCGCAAATGGGAAACGATTCGTTTACTGCCATCTAACGATTGCGATTTCTACAATTTTTGTGGGGATTTTGGGGTTTGTTCTGAAACGGGTCGTCCTAAGTGTAGCTGCCCTCAAGGGTTTATTCCCAAAAACAAAGAACAATGGGACAGAGGGACCTGGTCAGATGGGTGTCAGAGGAAGACGCCATTGCTTCAGGAGAGAATGAACAGTAATCCGAATGGAACTATTGAAGATGGTGAAGAAGATGGGTTTGTGCCCGTAACATTTGTGAAATTGCCCGATTTCATAACTGGAGTAGTGGTGGATTCGTGTAGAGATAGATGTTCCAACAGTTCTTCGTGTGTTGCATATTCGGATGCTCCTGGAATTGGCTGTGCTACTTGGGATGGACCTTTAAAAGATATTCAGAAATTCGATGGTGTTGGGAATACTTTGAACATTCGTCTCGCTCATTCTGATTTGATATCTGTAGATAGTGAGAGCAAATTGTCAGCCGGTGTGATTGTATTGATATGTTTAGGAGCGGCAGCTGCCATAGCCATAATAGCGTTTCTGCTATGGAAATTCGGAGGCAAAATGAAAGGTTCACCGGCTGCTTCTTCAAGTGAACCTCAGAACAAAACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAGAGAACTTTCAGCAGAGCTTTCAGGGCCATACGAATTAGGCGTAGAAGGCGAACAATTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGTTGCGGCTACTGATAACTTTTCTGAGGAAAACAAGCTTGGCCAGGGAGGCTTCGGCCCTGTATACAAGGGAAAGCTGCCATGTGGACAAGAAGTTGCTGTCAAGAGGCTTTCAGTCCAGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATTATACTAATAGGAAAGTTACAGCATCGAAACCTCGTCAGACTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTTGATCCAAACAAGCAGGCACTACTAGACTGGAAAAAACGGTTGTCAATCATTGAGGGAATTGCACGAGGGCTGCTATACCTTCATCGAGACTCGAGACTTCTTATTATTCATAGAGATTTGAAAGCTAGCAACATTTTGCTAGATGAAGACATGAATCCAAAGATATCAGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAATGAGGCAACAAATACAATTCGAGTTGTTGGCACATATGGTTACATGGCTCCAGAGTACGCAATGGAAGGTTTATTTTCGGTGAAATCAGACGTCTATAGTTTTGGTGTATTATTATTGGAAATAATCTGTGGTCGGAGGAATACTAGCTTTCGCTCAACTGAATACTTAACCCTTATTAGCTATGCTTGGAAACTTTGGAATGAAGGTAGAGCGATTGAACTTCTCGACCCGTATATTAGCGATTCATCCCCTGAGAATGAAGTATTGAAATGCATACATGTGGCAATGTTGTGTGTTCAAGACTCTCCAGCATATAGGCCAACATTGCAATCCTTGGTACTAATGCTAGAGAGTGAATCTACATCTCTCCCACAGCCAAGACAACCCACCTATACTTCAACAAGAGCCTCGATCGATACAGACGTGTTTACAGAAGGCCACGACATTGTATCGTCAAACGACATAACAGTAACAATGTTGGATGGTAGATAG 2580 42.29 MGNNCRKVVGFLQFFVISFLLCFSPLFCDAANSFTKGRGLRDGTNETLISLNESYELGFFSPINSSSRYVGIWYHKIEEQSVIWVANRDRPLLNRDGVLTIGDEGNLVVLDGNNVSFWTSNITANAFDPRNLTLHNHGELVLTSGDDSSKVLWSSFEHPTDTFLPNMEVRVNSEIGEKRMFMSWKSETDPAVGNYCLGVDPRGAVQIIIWNGNNRWWRSGHWDRQIFSGIPNMRSTSLYGFKIIPENGNTISVTFQALNDSDKLKFQILWNGKEAQQRLNEANRKWETIRLLPSNDCDFYNFCGDFGVCSETGRPKCSCPQGFIPKNKEQWDRGTWSDGCQRKTPLLQERMNSNPNGTIEDGEEDGFVPVTFVKLPDFITGVVVDSCRDRCSNSSSCVAYSDAPGIGCATWDGPLKDIQKFDGVGNTLNIRLAHSDLISVDSESKLSAGVIVLICLGAAAAIAIIAFLLWKFGGKMKGSPAASSSEPQNKTEVPMFDLSKSRELSAELSGPYELGVEGEQLSGPDLPMFNFNCIVAATDNFSEENKLGQGGFGPVYKGKLPCGQEVAVKRLSVQSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKQALLDWKKRLSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEIICGRRNTSFRSTEYLTLISYAWKLWNEGRAIELLDPYISDSSPENEVLKCIHVAMLCVQDSPAYRPTLQSLVLMLESESTSLPQPRQPTYTSTRASIDTDVFTEGHDIVSSNDITVTMLDGR 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37796211 37799524 - CePI673135_04g019490.1 Cec04g1949 201431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1949 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 511 616 - -
Cec04g1949 859 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544(InterPro)
Cec04g1949 859 Gene3D - 29 156 IPR036426 -
Cec04g1949 859 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Cec04g1949 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1949 859 Pfam Domain of unknown function (DUF3403) 814 859 IPR021820 GO:0004674(InterPro)
Cec04g1949 859 Pfam PAN-like domain 363 417 IPR003609 -
Cec04g1949 859 CDD STKc_IRAK 547 813 - -
Cec04g1949 859 CDD B_lectin 43 159 IPR001480 -
Cec04g1949 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 156 - -
Cec04g1949 859 CDD PAN_AP_plant 360 433 - -
Cec04g1949 859 Pfam Protein tyrosine and serine/threonine kinase 544 810 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1949 859 Gene3D Transferase(Phosphotransferase) domain 1 617 831 - -
Cec04g1949 859 SMART blect_4 39 159 IPR001480 -
Cec04g1949 859 SUPERFAMILY Protein kinase-like (PK-like) 526 836 IPR011009 -
Cec04g1949 859 ProSiteProfiles Bulb-type lectin domain profile. 31 155 IPR001480 -
Cec04g1949 859 PIRSF SRK 5 859 IPR024171 GO:0004674(InterPro)
Cec04g1949 859 Pfam D-mannose binding lectin 82 185 IPR001480 -
Cec04g1949 859 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 223 IPR036426 -
Cec04g1949 859 ProSiteProfiles Protein kinase domain profile. 541 827 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1949 859 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 825 - -
Cec04g1949 859 CDD EGF_CA 295 327 - -
Cec04g1949 859 Gene3D Phosphorylase Kinase; domain 1 516 616 - -
Cec04g1949 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 617 820 - -
Cec04g1949 859 SMART serkin_6 541 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0526 Cec-Chr3:5523302 Cec04g1949 Cec-Chr4:37796211 1.30E-193 dispersed
Cec03g0527 Cec-Chr3:5537018 Cec04g1949 Cec-Chr4:37796211 3.70E-192 dispersed
Cec04g1938 Cec-Chr4:37726853 Cec04g1949 Cec-Chr4:37796211 2.20E-113 dispersed
Cec04g1949 Cec-Chr4:37796211 Cec05g1681 Cec-Chr5:27885745 5.60E-181 dispersed
Cec02g0160 Cec-Chr2:1585626 Cec04g1949 Cec-Chr4:37796211 6.70E-118 wgd
Cec03g0514 Cec-Chr3:5419790 Cec04g1949 Cec-Chr4:37796211 7.90E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71951 PF07714 PK_Tyr_Ser-Thr 2.10E-47 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1949 - - - 0.0