Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g1985 ATGGGTTGTCCAAACTGGAATTTGTTGATGAAGATCTTAATTGGGCTGCTCTTGGTCTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTGTTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGGATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTGGACCAATTTGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACATTGCCCGCTACACTGAGAAGTTTTTCGTTATCAGCTAATCAATTCACTGGAAGCATTCCCCCTGCATTGGCCTCGCTAACACAACTAATGGACCTGTCACTAAATAATAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACTTGTCAGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTGCTACATTGCACTTGCAGAACAATAAACTTTCTGGGATGCTCGACGCTCTACAGGATCTTCCCTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTTAATACTACGATAATTTCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACAACCAACCAGACAGACAGGTGCAGGTCAGCCATTGTCGTCAGGGACTCCTGGATCGAATGGAGCAAGGACCTTTTTCTCTGTTAAGCGGATAATTTGGATTGTTATTATTGGCACAGTAATATTATTAGCATTGGGATTCTGTCTTCTCGTGTCGATATGTTTGAAAAGAAGCAAGCATCGAGAAGACACCGAGATTCTTCGTGACAGCGCTGATATGGCTTCTAAATATAAGCCTAAACCTACAAAGACCTCGGTTGAAGGTGATGACATGGAGAAAGGTCCAAGGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAATAATGGATTTTACCACCTCAAGGCTACATGATAGACAGGACACAAATGGGAAAAGAAAAGATGCCTCTAATATGAGTTTTCGTAAAGACCTTACGGAGAGTTCGAGCATAAGCATAGATGACTTCCCTGCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATAGTGGCAGCTGAAGTGCCCAGTAGAGTACCTAGAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATTGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAGGATAATCTTCTGGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGGAGGCTTCTGGCTGTTAAGAAACTGGACGGATCCTCTTCAACTAATTGGAGCGATGATGAATTTCACAACCTTGTGTCTAATATATGCCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGCGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGTAAAAACGGCACGCTCTATGATGCGCTCCATGTCGACAAGGAGATGCATCAGAAGCTTTCATGGAATGTACGTGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTACCATGCACCAAAACTTTAAGTCTGCCAACATTCTCTTAGACAATGAGCTAAAACCACAAGTCTCTGACTCTGGCTTAGCTCGGCTGCTTTCTTCAGCTAGTCAGTCGGCTGCACGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTTAGGAACTTACACTTACCAAAGTGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACCGGTCGGAAGTCCTGTGACCGATCACTGCCTCGAGGAGAACAATTTCTTGTTCGATGGGCTGTTTCAAGGCTGCATGATATTGATGCATTATCAAGAATGGTCGATCCATCTCTTAATGGCATGTATCCTGTTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCCTGTATAATGAGAGAGCCCGAATTTCGGCCCCCAATCTCTGAGATTGTACAGGAACTCTTACAAATGCTGTAG 2259 44.27 MGCPNWNLLMKILIGLLLVFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVGCVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPPALASLTQLMDLSLNNNLLTGVIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLATLHLQNNKLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIISSAPALAPSPFAVAPVTVGQPTRQTGAGQPLSSGTPGSNGARTFFSVKRIIWIVIIGTVILLALGFCLLVSICLKRSKHREDTEILRDSADMASKYKPKPTKTSVEGDDMEKGPRETTLKPLDRDRMKDRIMDFTTSRLHDRQDTNGKRKDASNMSFRKDLTESSSISIDDFPAPPPPPPFPLLSTQEIAKPIVAAEVPSRVPRKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGSSSTNWSDDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPTMHQNFKSANILLDNELKPQVSDSGLARLLSSASQSAARFLPAHGYSAPEFELGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVSRLHDIDALSRMVDPSLNGMYPVKSLSRFADIISSCIMREPEFRPPISEIVQELLQML 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38050326 38054465 - CePI673135_04g019850.1 Cec04g1985 201467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g1985 752 PANTHER LEUCINE RICH REPEAT KINASE 2 71 750 IPR051420 -
Cec04g1985 752 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 554 752 - -
Cec04g1985 752 ProSiteProfiles Protein kinase domain profile. 476 752 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g1985 752 Pfam Protein tyrosine and serine/threonine kinase 480 748 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g1985 752 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Cec04g1985 752 Gene3D Phosphorylase Kinase; domain 1 443 553 - -
Cec04g1985 752 MobiDBLite consensus disorder prediction 341 369 - -
Cec04g1985 752 Gene3D Ribonuclease Inhibitor 39 253 IPR032675 -
Cec04g1985 752 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 445 553 - -
Cec04g1985 752 Gene3D Transferase(Phosphotransferase) domain 1 554 752 - -
Cec04g1985 752 MobiDBLite consensus disorder prediction 387 407 - -
Cec04g1985 752 SUPERFAMILY L domain-like 35 237 - -
Cec04g1985 752 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
Cec04g1985 752 SUPERFAMILY Protein kinase-like (PK-like) 453 748 IPR011009 -
Cec04g1985 752 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g1985 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1985 Cec-Chr4:38050326 Cec07g1541 Cec-Chr7:30982735 1.20E-118 dispersed
Cec02g0135 Cec-Chr2:1385850 Cec04g1985 Cec-Chr4:38050326 2.80E-154 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec02g0135 . 65 817 Strubbelig Receptor Gene Family AT4G03390 62.2 5.5e-204 708.0
Cec04g1985 . 17 752 Strubbelig Receptor Gene Family AT4G03390 52.1 8.6e-165 577.8
Cec09g0147 . 470 764 Strubbelig Receptor Gene Family AT4G03390 58.7 5.7e-92 335.9
Cec10g1755 . 73 798 Strubbelig Receptor Gene Family AT5G06820 53.8 6.4e-186 647.9
Cec08g0512 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 1.4e-193 673.3
Cec09g0147 . 101 767 Strubbelig Receptor Gene Family AT1G78980 50.1 1.5e-120 430.6
Cec08g0512 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 3.2e-147 519.2
Cec09g0147 . 99 762 Strubbelig Receptor Gene Family AT3G13065 50.6 3.5e-101 366.3
Cec01g0983 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.0e-85 312.4
Cec10g1755 . 73 798 Strubbelig Receptor Gene Family AT5G06820 53.8 6.4e-186 647.9
Cec02g0135 . 65 817 Strubbelig Receptor Gene Family AT4G03390 62.2 5.5e-204 708.0
Cec04g1985 . 17 752 Strubbelig Receptor Gene Family AT4G03390 52.1 8.6e-165 577.8
Cec09g0147 . 470 764 Strubbelig Receptor Gene Family AT4G03390 58.7 5.7e-92 335.9
Cec08g0512 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 3.2e-147 519.2
Cec09g0147 . 99 762 Strubbelig Receptor Gene Family AT3G13065 50.6 3.5e-101 366.3
Cec08g0512 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 1.4e-193 673.3
Cec09g0147 . 101 767 Strubbelig Receptor Gene Family AT1G78980 50.1 1.5e-120 430.6
Cec07g1541 . 1 813 Strubbelig Receptor Gene Family AT1G53730 52.1 3.8e-199 691.8
Cec09g0147 . 95 789 Strubbelig Receptor Gene Family AT1G53730 60.7 8.0e-181 630.9
Cec08g0512 . 20 690 Strubbelig Receptor Gene Family AT1G53730 50.5 7.5e-155 544.7
Cec01g0983 . 9 689 Strubbelig Receptor Gene Family AT1G53730 51.4 3.4e-147 519.2
Cec09g0147 . 95 779 Strubbelig Receptor Gene Family AT3G14350 54.7 2.5e-160 562.8
Cec01g0983 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.3 1.4e-177 619.8
Cec07g1541 . 492 820 Strubbelig Receptor Gene Family AT4G22130 63.4 8.0e-120 427.9
Cec09g0147 . 465 781 Strubbelig Receptor Gene Family AT4G22130 63.6 6.3e-117 418.3
Cec02g0135 . 516 827 Strubbelig Receptor Gene Family AT4G22130 58.8 7.8e-107 384.8
Cec08g0512 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.1 7.8e-99 358.2
Cec04g1985 . 464 752 Strubbelig Receptor Gene Family AT4G22130 59.5 3.9e-98 355.9
Cec10g1755 . 459 781 Strubbelig Receptor Gene Family AT4G22130 52.3 1.4e-92 337.4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71952 PF07714 PK_Tyr_Ser-Thr 2.60E-37 CL0016 Cec PK