Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2015 ATGGACGACCACCACAATCCCCACCACCACCACCATGAACTCCCCCAATTCCCCTCCGCCGCCGCCATTCTCCACTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAAAATTCATGTTATCTCCCACCTATTCTTTCTCAAACTTGCTTGGGATTCTCCTCCTCCGCCCCACAATCCTATTTTTACTCAAATCCTCCTCCTCTACATGAACAACTTCCATCCCATTTCCCACCTTCTTCCACCTTCCTCACTTATGGTTTCAATGAGCCAACTAATTCTCTATTCCCTAAAGATGAAGGAAGAAGGGCTATGGATGCTTGGAGTACTAAAGTCGCTCGTACCAACCGAAGACTCGCCCGCCAAAGAACCCTTACTTTAACCCGAACCACTTCTTCTTCCTCTTCTGCAGCTTATAATGGTTGTTATAATGATGAATATTCTAAGGGTTTAACAACAACCCACTTCCCAAACACTGATCCCTCTCACAATAATCGCAATCTTTTTACCTTTTGCACTCCAGATAACAAGATTTTGAGAATGCTGCTGAAGAAGGAGCTGAAGAACAGTGATGTTGGATCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAGGCAGAAGAGAACCTTCCATTTCTCACTGATAAGGAAGGTATCCAAATTGTGGTGAGAGATGTGAACTCAATCAGAAAATGGACCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAGAACACAGGGGATTTCGTTAGACAAAATGGTCTGTTGATGGGAGATTCAATGACACTATACGAGGATGACTGCAAGAACCTCTACGTGGCGGTTGAAAAAGGTGAGAATCATTCGGGAATGGAAGAAAATTACAAGCAGCAGCAGCAGCAGCAACAACAGCAGTGTAGTAATTTGTCAAACATGGAAATTAAAGACGAAGAAGAAGATGCTTCATTAGCTTTGTTGATCGAAGAGCTCAAACACAAAGCCGACGACGACCCCCACGCGCCGCCCTGCTGCAACGACTATTCCTACTTCACCGCTGCTACTATGATGGGAGGTGCTACAATAAAAGGGAATTATAATAACATTAATAATAACAATAATGAGACTAATACTAATTACAAGGAAGTAATGGAAGATCTGCAGGGGATTAATAATAATAATAATAATAATAATGGGAATGGGTTTGAAGATTGCTTTGGAGGGCTTGATACTCTGCCGGAAGTAACTGGATTCAAGTTCCCTCTCTTTGACTACTTCAGCAACAATGATAGAACGTGA 1287 43.43 MDDHHNPHHHHHELPQFPSAAAILHSPPPPPPPPPQNSCYLPPILSQTCLGFSSSAPQSYFYSNPPPLHEQLPSHFPPSSTFLTYGFNEPTNSLFPKDEGRRAMDAWSTKVARTNRRLARQRTLTLTRTTSSSSSAAYNGCYNDEYSKGLTTTHFPNTDPSHNNRNLFTFCTPDNKILRMLLKKELKNSDVGSLGRIVLPKREAEENLPFLTDKEGIQIVVRDVNSIRKWTMKYKYWANNRSRMYVLENTGDFVRQNGLLMGDSMTLYEDDCKNLYVAVEKGENHSGMEENYKQQQQQQQQQCSNLSNMEIKDEEEDASLALLIEELKHKADDDPHAPPCCNDYSYFTAATMMGGATIKGNYNNINNNNNETNTNYKEVMEDLQGINNNNNNNNGNGFEDCFGGLDTLPEVTGFKFPLFDYFSNNDRT 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38305155 38308800 - CePI673135_04g020150.1 Cec04g2015 201497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2015 428 SMART B3_2 182 283 IPR003340 GO:0003677(InterPro)
Cec04g2015 428 Coils Coil 289 309 - -
Cec04g2015 428 MobiDBLite consensus disorder prediction 289 305 - -
Cec04g2015 428 MobiDBLite consensus disorder prediction 286 305 - -
Cec04g2015 428 Coils Coil 362 389 - -
Cec04g2015 428 Pfam B3 DNA binding domain 184 279 IPR003340 GO:0003677(InterPro)
Cec04g2015 428 CDD B3_DNA 181 277 IPR003340 GO:0003677(InterPro)
Cec04g2015 428 ProSiteProfiles B3 DNA-binding domain profile. 182 283 IPR003340 GO:0003677(InterPro)
Cec04g2015 428 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 117 309 IPR044800 GO:0003700(InterPro)
Cec04g2015 428 Gene3D - 171 298 IPR015300 -
Cec04g2015 428 SUPERFAMILY DNA-binding pseudobarrel domain 181 279 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2015 Cec-Chr4:38305155 Cec09g0909 Cec-Chr9:8603971 8.40E-29 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29421 PF02362 B3 7.10E-16 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2015 K09287 - csv:105436043 512.686