Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2041 ATGAAAATTATAGAAGATGAATCTCCCTCTTCTGCTGGTTCCTCTGTTTCTTCTTCCTCCGCTTCTGCTTTAACCTCCTCTCCTTCACCTTCTGTTACTTCCTCAATTTGCTTGGAGCTATGGCATGCTTGTGCTGGACCTCTCACCTCTTTGCCCAAGAAAGGGAGTTTGGTTGTGTATTTGCCGCAGGGTCACTTCGAGCTGATTCAAGAATTTCCGGCTACGCCTTATGATCTCCCTCCCCACATCCGCTGTCGCGTCATTGATAAAATGGAGCACAAGATGCAGGAAGAGATGAACAATGACAGTGAGGAGGAGGATGTTGAAGAAGGTGAGAAGACTACAACACCCCACATGTTCTGCAAGACCCTTACCGCTTCTGACACCAGTACTCATGGAGGCTTTTCCGTCCCTAGACGTGCAGCTGAGGATTGCTTCCCACCATTGGATTATAATCAACAGAGGCCTTCACAAGAGCTCGTAGCAAAGGATCTCCTTGGGCTAAAATGGAAGTTCAGGCACATATATCGTGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCTTTCGTGAACAAGAAAAGGCTTGTTTCTGGAGATGCAGTGCTTTTTCTTAGGGGCAACGATGGTGAATTAAGACTGGGAATTCGAAGAGCTGCACAGCTTAAAAATGGTTCTGCCTTTTCCAATATTTGCAGTCAGCAGCTCAACTCTAGTAGTGTCATGGATGTGGTTAATGCGATATCTACAAAAAGTTCCTTTAGTGTATACTACAATCCCAGGGCTACCTCTTCACAGTTTGTCTTACCCTTTCACAAGTTCTTGAAGAGCATTAACCATTCTTTCTCTGTTGGAATGAGGTTTAGGCTGAGTTTTGAGACCGAAGATGCTGCAGATCGAAGACATTCTGGACATATAACTGGAGTTGGCGATGTGGATCCTATCAGATGGCCAGGATCAAGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGCGAAACTAACAGGCATGGCAGGGTTTCCCCTTGGGAGATTGAGCCCTCTGGTTCTGTCTCTTTGTCTAGCAACTTGGTTCCACCTGGTCTGAAAAGAACCAGGATTGGGCTCTCTTCCACAAAACTAGAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCGTTGACGGTGAGGAAAACAATCGTAATCCACCCGAAAAGAGGAGATTGTTTCCTGGTTTACATGGTTCTGGGATAGCTTTGATGAGAAATGGTCCAAGAATCCCACTTATTAACTCCGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTTCAATACCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCCTTTTATGGTAGGTCCATGGCCACCAATGAAGTTAAGGCAAGTGGTGGTTGTGGCCCTGTCGATGGCATTCGATTATCTAGGACTAAAGATGGATGGCCCATGACAATGCAATGTGAAAATTTCCTCACACGGTCTTCCGTTCCTTCTGTACAAGTCTCATCACCATCTTCTGTATTAATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGCTTTAATTCACATAACCGTGTTGCAGAACAGAGGATTATGAACAAAAGTACATCCCATAATTCTGGGACAGCATTTATCACTAACAATAGCTCGAATACTGAAGTCAACCCACAAGGCATGTGTCCCACTTCATTGGGCGAGCAGAATCACCTCGGCCTATCACATCCTTCAACAACAACAGCACCAGCAGCATTTACAGGCAGTAAAGATCTGTCTTCAACTTGCAAACCTGGCTGTAGATTGTTTGGTTTTTCATTGACAGAGGAAAAGAATGTTGGGAATACAGACAAGACATCTCCAGCAACAACTTCCAATAATGCAGGAACAACCACTGTTTTGTCCAATGTTGGAGTACAATGTCCTTTGAAGTCTCCTCTCATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGGGGCTTTTCAGTATCACTTTGCAAATTACAGTACCTACTACTGA 2097 44.92 MKIIEDESPSSAGSSVSSSSASALTSSPSPSVTSSICLELWHACAGPLTSLPKKGSLVVYLPQGHFELIQEFPATPYDLPPHIRCRVIDKMEHKMQEEMNNDSEEEDVEEGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKNGSAFSNICSQQLNSSSVMDVVNAISTKSSFSVYYNPRATSSQFVLPFHKFLKSINHSFSVGMRFRLSFETEDAADRRHSGHITGVGDVDPIRWPGSRWRSLMVRWDDGETNRHGRVSPWEIEPSGSVSLSSNLVPPGLKRTRIGLSSTKLEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPVDGEENNRNPPEKRRLFPGLHGSGIALMRNGPRIPLINSETSSRGIVFDESFQYHKVLQGQEIFPSPFYGRSMATNEVKASGGCGPVDGIRLSRTKDGWPMTMQCENFLTRSSVPSVQVSSPSSVLMFQQSMVPVQSFNSHNRVAEQRIMNKSTSHNSGTAFITNNSSNTEVNPQGMCPTSLGEQNHLGLSHPSTTTAPAAFTGSKDLSSTCKPGCRLFGFSLTEEKNVGNTDKTSPATTSNNAGTTTVLSNVGVQCPLKSPLMSKVVGSNCTKGAFQYHFANYSTYY 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38502579 38510723 - CePI673135_04g020410.1 Cec04g2041 201523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2041 698 CDD B3_DNA 118 220 IPR003340 GO:0003677(InterPro)
Cec04g2041 698 Gene3D - 118 222 IPR015300 -
Cec04g2041 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 651 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec04g2041 698 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677(InterPro)
Cec04g2041 698 MobiDBLite consensus disorder prediction 1 29 - -
Cec04g2041 698 SUPERFAMILY DNA-binding pseudobarrel domain 115 230 IPR015300 -
Cec04g2041 698 SMART B3_2 120 222 IPR003340 GO:0003677(InterPro)
Cec04g2041 698 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677(InterPro)
Cec04g2041 698 FunFam Auxin response factor 283 354 - -
Cec04g2041 698 Gene3D - 283 357 - -
Cec04g2041 698 FunFam Auxin response factor 118 222 - -
Cec04g2041 698 Pfam Auxin response factor 246 327 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec04g2041 698 MobiDBLite consensus disorder prediction 8 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2041 Cec-Chr4:38502579 Cec06g2027 Cec-Chr6:33396158 9.00E-89 dispersed
Cec04g2041 Cec-Chr4:38502579 Cec09g0941 Cec-Chr9:8919860 5.50E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29429 PF02362 B3 1.50E-21 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2041 K14486 - csv:101220018 1217.6