Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g2078 | ATGGCTGAGGTTCATAGTAGCAACACGGATGGAATTAAGCTTTTTGGCACAATGATCCATTTACAGACAAGAAAAATGAAGGAGGAACCGGAGAAAGGCGGCGGCGAAGGTGATGAAACAGAGATGAAGAGGCCAGAAAAAATTATTCCATGCCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCTAGACATTTCTGCAAGGGTTGCCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTACCCATCGGAGCTGGCCGCCGGAGAACCAAGCCGCCGCCTAATTGCCGGACCCTTTCCGGCGAGCTGCCAGAGGATTATGGGCAGCTTTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTAGATGCGGTGGAAGGGTGGCGTCTCACGTTGGCGGAACAGGATTTTAGCTCGGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGCCAAACGTCTTAA | 507 | 49.7 | MAEVHSSNTDGIKLFGTMIHLQTRKMKEEPEKGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPNCRTLSGELPEDYGQLYDAASGIIHQLELDAVEGWRLTLAEQDFSSVFPFKRRKIIGQHGQTS | 168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 38768650 | 38769156 | - | CePI673135_04g020780.1 | Cec04g2078 | 201560 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g2078 | 168 | MobiDBLite | consensus disorder prediction | 21 | 44 | - | - | |
Cec04g2078 | 168 | ProSitePatterns | Zinc finger Dof-type signature. | 51 | 87 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cec04g2078 | 168 | ProSiteProfiles | Zinc finger Dof-type profile. | 49 | 103 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cec04g2078 | 168 | PANTHER | CYCLIC DOF FACTOR 2 | 27 | 110 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec04g2078 | 168 | MobiDBLite | consensus disorder prediction | 22 | 44 | - | - | |
Cec04g2078 | 168 | Pfam | Dof domain, zinc finger | 47 | 102 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g2078 | Cec-Chr4:38768650 | Cec10g1611 | Cec-Chr10:30548978 | 7.90E-31 | dispersed | |
Cec03g0636 | Cec-Chr3:6819124 | Cec04g2078 | Cec-Chr4:38768650 | 4.30E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29434 | PF02701 | zf-Dof | 1.60E-31 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g2078 | - | - | - | 0.0 |