Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2078 ATGGCTGAGGTTCATAGTAGCAACACGGATGGAATTAAGCTTTTTGGCACAATGATCCATTTACAGACAAGAAAAATGAAGGAGGAACCGGAGAAAGGCGGCGGCGAAGGTGATGAAACAGAGATGAAGAGGCCAGAAAAAATTATTCCATGCCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCTAGACATTTCTGCAAGGGTTGCCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTACCCATCGGAGCTGGCCGCCGGAGAACCAAGCCGCCGCCTAATTGCCGGACCCTTTCCGGCGAGCTGCCAGAGGATTATGGGCAGCTTTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTAGATGCGGTGGAAGGGTGGCGTCTCACGTTGGCGGAACAGGATTTTAGCTCGGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGCCAAACGTCTTAA 507 49.7 MAEVHSSNTDGIKLFGTMIHLQTRKMKEEPEKGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPNCRTLSGELPEDYGQLYDAASGIIHQLELDAVEGWRLTLAEQDFSSVFPFKRRKIIGQHGQTS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38768650 38769156 - CePI673135_04g020780.1 Cec04g2078 201560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2078 168 MobiDBLite consensus disorder prediction 21 44 - -
Cec04g2078 168 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec04g2078 168 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec04g2078 168 PANTHER CYCLIC DOF FACTOR 2 27 110 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Cec04g2078 168 MobiDBLite consensus disorder prediction 22 44 - -
Cec04g2078 168 Pfam Dof domain, zinc finger 47 102 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2078 Cec-Chr4:38768650 Cec10g1611 Cec-Chr10:30548978 7.90E-31 dispersed
Cec03g0636 Cec-Chr3:6819124 Cec04g2078 Cec-Chr4:38768650 4.30E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29434 PF02701 zf-Dof 1.60E-31 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2078 - - - 0.0