Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2089 ATGGAGAGTTTCAATATGTGGGCTGTGACTCCGAGGGCATTTTGGTCACATAGACGTCGGCAGGCAGTCTTGTCGCCAACTCAACCAACCACACGCTTCTCTTTCCTTCCCGTCTCTGATTCCGCCATGGCCGACGATAAGGAAATGTCAGCCCCTGTCATTGATGGAAATGATCCAGTTACGGGTCACATAATATCCACGACTATTGGAGGCAAGAATGGGGAGCCCAAACAGACCATAAGCTACATGGCAGAACGTGTTGTTGGGACTGGATCATTTGGTATTGTTTTCAAGGCCAAATGCTTGGAAACGGGTGAAAATGTGGCTATAAAGAAGGTTTTGCAGGATAGAAGATATAAGAACCGTGAACTCCAGTTAATGCGTGTGATGGATCATCCAAATGTCATTTCCTTAAAGCATTGTTTCTTTTCCACTACTACAAAAGACGAACTTTTTCTCAACTTGGTAATGGAATATGTCCCTGAAACTATGTTTCGGGTTTTGAAGCATTACAGTAACGCAAATCAAAGAATGCCAATCATCTATGTCAAATTATACATGTACCAGGTTTTTAGGGGCCTGGCCTATATCCACACAGTTCCTGGAGTTTGTCACCGAGATTTGAAGCCTCAAAATATTTTGGTGGATCCCCTTACTCACCAAGTTAAAATATGCGATTTTGGAAGTGCAAAAATGCTTATGAAAGGTGAAGCCAATGTTTCATACATATGTTCACGCTTCTATAGAGCACCAGAACTCATCTTTGGAGCTACAGAGTACACAACTTCAATAGATATTTGGTCTGCTGGCTGTGTCCTTGCAGAGCTACTTTTGGGACAGCCTTTGTTTCCCGGAGAAAATGCAGTGGACCAGCTTGTAGAGATTATTAAGGTTCTTGGCACACCAACTCGTGAAGAAATTCGATGTATGAACCCAAGTTATACAGACTATAGGTTTCCACAGATAAAAGCTCACCCATGGCACAAGGTTTTCCACAAACGGATGCCTCCCGAGGCAATTGATCTGGCTTCTCGCTTGCTTCAGTATTCACCCAGTCTTCGCTGCACAGCACTGGAAGCTTGCACGCATCCTTTCTTTGACGAACTTCGAGAACCCAATGCTCGTCTCCCCAATGGTCGACCATTCCCACCCCTCTTTAATTTTAAACAAGAGCTGTCAGGTGCCTCTCCAGAGCTCGTTAACAAGTTGATACCTGATCAAGTGAAACGACAAATGGGTCTTAATTTGCATCTAGCAGTTTCTCATTTGTCTCCCAAAGGAGTAAACTATGAAGTGGCGGCTTTGATATCAGTGAAGAGTAGGATAAGGGACGAGCGGGGAGTGATGCAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGGTTGCTTGCTCTGCTGAGAGCTTTGTGATTTCTCTTGAGATGCCAAATATGGGCTTATCTGGAACGCTTTCCCCTAGCATTGGGAACCTGAGTCATCTTCGGACAATGTTGTTGCAAAATAATGAGTTATCTGGTCCAATCCCAGATGATATAGGAGAACTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGTTTGTAGGTGGGATTCCAAGTTCTTTGGGGTTTCTCACTCATTTAAATTACTTGAAGCTCAGTAGTAACAAGTTAAGTGGACCAATACCGGAATCTGTTGCAAATATCTCAGGCCTCTCCTTTCTAGATTTATCGAATAATAATCTCAGTGGTCCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGCTTCCTTTGTGCATCTTCATCATCTGAATTTTGTGGTGTACTTCCAAAGCCAGTTAACGAAACTGGTTCGTCCCAGAAATATAATGGCCGTCATCACATGGTTCTTTCCATAGCACTAATTGTCAGTTTCACATTTGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCACATCCTACGTGCAACAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCGAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAACCTCTTGCGTCTGTATGGCTTTTGTATGACACCAGATGAGAGATTGCTTGTTTATCCATATATGCCAAATGGGAGTGTTGCTGACCGTCTTAGAGATGCAGGCCAAGAGAAGCCTTCATTGAATTGGAACAGAAGATTGCGTATTGCCCTTGGTGCAGCACGTGGACTACTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTTGGGGATTTTGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTGGAACTCTTGACAGGGCAAAAAGCACTTGATGCTGGCAATGGTCAAATTCGAAAGGGAATGATCCTCGAATGGGTTAGAACATTACATGAGGAAAAGAGGTTAGATGTGCTGGTGGACAGGGATCTTAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCTGTAGAGTTGGCTCTGCAGTGTACTCAATCGCATCCACAACTTAGACCAAAGATGTCCGAGATCCTGAAGATTCTAGAAGGTCTCGTTGGACAGTCGAGTCAAATGGAGGAATCACCAGGTGGAGCAAGTCTTTATGAGGATAGAACTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTTGTCGTTGAAGCCATGGAGCTTTCCGGACCTCGATGA 3048 43.04 MESFNMWAVTPRAFWSHRRRQAVLSPTQPTTRFSFLPVSDSAMADDKEMSAPVIDGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFKAKCLETGENVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTTKDELFLNLVMEYVPETMFRVLKHYSNANQRMPIIYVKLYMYQVFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKMLMKGEANVSYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPSYTDYRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACTHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDQVKRQMGLNLHLAVSHLSPKGVNYEVAALISVKSRIRDERGVMQGWDINSVDPCTWNMVACSAESFVISLEMPNMGLSGTLSPSIGNLSHLRTMLLQNNELSGPIPDDIGELSELQTLDLSNNQFVGGIPSSLGFLTHLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYSVAGNSFLCASSSSEFCGVLPKPVNETGSSQKYNGRHHMVLSIALIVSFTFVVSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQIRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKILEGLVGQSSQMEESPGGASLYEDRTHSFSRNYSDIHEESSFVVEAMELSGPR 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38856958 38866662 + CePI673135_04g020890.1 Cec04g2089 201571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2089 1015 Gene3D Phosphorylase Kinase; domain 1 67 161 - -
Cec04g2089 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g2089 1015 Gene3D Ribonuclease Inhibitor 428 609 IPR032675 -
Cec04g2089 1015 ProSitePatterns Protein kinases ATP-binding region signature. 88 112 IPR017441 GO:0005524(InterPro)
Cec04g2089 1015 Gene3D Transferase(Phosphotransferase) domain 1 162 409 - -
Cec04g2089 1015 Gene3D Transferase(Phosphotransferase) domain 1 768 976 - -
Cec04g2089 1015 Gene3D Phosphorylase Kinase; domain 1 662 767 - -
Cec04g2089 1015 FunFam Putative LRR receptor-like serine/threonine-protein kinase 428 610 - -
Cec04g2089 1015 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 421 1015 - -
Cec04g2089 1015 FunFam Somatic embryogenesis receptor kinase 1 661 767 - -
Cec04g2089 1015 FunFam Somatic embryogenesis receptor-like kinase 1 768 979 - -
Cec04g2089 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g2089 1015 FunFam Shaggy-related protein kinase kappa 162 409 - -
Cec04g2089 1015 ProSitePatterns Protein kinases ATP-binding region signature. 698 720 IPR017441 GO:0005524(InterPro)
Cec04g2089 1015 SUPERFAMILY Protein kinase-like (PK-like) 674 965 IPR011009 -
Cec04g2089 1015 SMART serkin_6 82 366 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2089 1015 SMART serkin_6 692 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2089 1015 SUPERFAMILY L domain-like 430 590 - -
Cec04g2089 1015 ProSiteProfiles Protein kinase domain profile. 692 968 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2089 1015 CDD STKc_GSK3 77 369 IPR039192 -
Cec04g2089 1015 Pfam Protein kinase domain 695 962 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2089 1015 Pfam Protein kinase domain 82 366 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2089 1015 FunFam Glycogen synthase kinase-3 beta 66 161 - -
Cec04g2089 1015 Pfam Leucine rich repeat N-terminal domain 429 468 IPR013210 -
Cec04g2089 1015 ProSiteProfiles Protein kinase domain profile. 82 366 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2089 1015 Pfam Leucine Rich Repeat 496 518 IPR001611 GO:0005515(InterPro)
Cec04g2089 1015 Pfam Leucine Rich Repeat 521 542 IPR001611 GO:0005515(InterPro)
Cec04g2089 1015 Pfam Leucine Rich Repeat 544 565 IPR001611 GO:0005515(InterPro)
Cec04g2089 1015 Pfam Leucine Rich Repeat 569 588 IPR001611 GO:0005515(InterPro)
Cec04g2089 1015 SUPERFAMILY Protein kinase-like (PK-like) 81 390 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1870 Cec-Chr2:36512637 Cec04g2089 Cec-Chr4:38856958 6.10E-201 dispersed
Cec04g2089 Cec-Chr4:38856958 Cec10g1417 Cec-Chr10:28519133 1.50E-180 dispersed
Cec04g2089 Cec-Chr4:38856958 Cec06g1792 Cec-Chr6:31378335 1.60E-60 wgd
Cec04g2089 Cec-Chr4:38856958 Cec07g0308 Cec-Chr7:3006547 1.90E-196 wgd
Cec04g2089 Cec-Chr4:38856958 Cec07g1128 Cec-Chr7:26516638 2.00E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71957 PF00069 Pkinase 1.10E-64 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2089 - - - 0.0