Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2107 ATGGCTGAGATTTCAGGATCAAGCAATGGACATCACACTGTTTCTTTGAACGTCAAAGATGAATCCACAGCCGTCACCAGCAGAGAAGTAGCAGCTGACTGGCTCTCTGTACCTTTCATTCAAAAGTTGATCGCAGAGATTGTGGGGACATATTTCTTGATATTTGCTGGTGGGGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTGATCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGGTTTATTCTGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTTACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAGCTGGGACACTTAGGCTAATATTTAATGGACACCAAGACCATTTCTCGGGGACCCTCCCAAGTGACTCGTATTTGCAAACCTTTGTGATTGAATTCATCATCACATTTTACCTCATGTTTGTAGTGTCTGGTGTTGCCACTGATAATAGAGCTATTGGTGAACTTGCTGGACTTGCTGTTGGTGCTACTGTTCTTCTCAACGTGATGTTTGCAGGGCCAATTACGGGAGCATCCATGAATCCAGCCAGAAGCTTGGGACCTGCTATAGTATCAAGGCAGTTCAAAGGGTTGTGGATTTACATTGTAGCTCCCATTTTTGGGGCAATTTCAGGTGCTTTGGTTTACAATACCATCAGGTTCACAGACAAGCCTCTAAGAGAGATCACTAAAAGTGCCTCTTTCCTTAAAGGACAAAGTCGCAATGGTTCGTCTTGA 831 44.04 MAEISGSSNGHHTVSLNVKDESTAVTSREVAADWLSVPFIQKLIAEIVGTYFLIFAGGASVVVNLSKDKVITFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQVLGSTLAAGTLRLIFNGHQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPIFGAISGALVYNTIRFTDKPLREITKSASFLKGQSRNGSS 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39000645 39002269 + CePI673135_04g021070.1 Cec04g2107 201589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2107 276 Gene3D Glycerol uptake facilitator protein. 5 262 IPR023271 -
Cec04g2107 276 Pfam Major intrinsic protein 35 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g2107 276 SUPERFAMILY Aquaporin-like 35 261 IPR023271 -
Cec04g2107 276 CDD MIP 41 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g2107 276 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g2107 276 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g2107 276 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g2107 276 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g2107 276 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g2107 276 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec04g2107 276 PANTHER AQUAPORIN NIP2-1 30 255 IPR034294 -
Cec04g2107 276 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cec04g2107 276 NCBIfam MIP family channel protein 45 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2107 Cec-Chr4:39000645 Cec05g1274 Cec-Chr5:12427670 2.30E-80 dispersed
Cec04g2107 Cec-Chr4:39000645 Cec05g2318 Cec-Chr5:34482005 3.10E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2107 K09874 - csv:101219297 509.99