Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2113 ATGAAGAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTAGTCAAGCAGGACCAAACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTACTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGACAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGCTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGTGCAAAGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTTCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACTAACAGTGTGAACATTACCAAGGGAATATTCCGCAAAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACGGATGAGGATAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTCCAGTTTCTTGGTGCTGTTACTCAAAGTTGGCCGATGATGATCGTTACAGAATATTTACCAAAGGGAGATCTAGGAGCATTATTGAGTAGAAAAAGAGAAATAAAAACAATGACGGTTGTGAGACTTGCCCTTGATATTGCAAGGGGGATGAATTATTTGCATGAGAACAAGCCAACACCAATTATTCATCGTAATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAAATTTTGGAGTTAGCAAGTTATTGAAAGTTAAAGAAGATACACCTTCGACTCATTCAGAGACTTCACGAAGATATGAAGCTCCGGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGATGTGTTTTCTTTTGCTTTGATTTTACAAGAGATGATTGAAGGCTGTCCTCCATTTCCTGACAAGGCAGATAGTGAAGTTCCTAAATTGTATGCAGCAGGAGAACGTCCCCCATTTAGAGCATCACTTAAACGTTATGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAATGAGAAGCCAAATAGTAGACCAACTTTTAGGCAGACAATAACCCAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATGCTTCCAGAATATTGAGGCAATGTTGAAGAGAGATCGTTCCCGTCGAAGCAGTTTCAATCTTTCGTCACATTCTTCTGCCAGCATAGCTACCAACTTTTGCCAATGTGATCCATCAAATTGGAAAAGTTTGACAAACAGGCTCAGCAGCCGAGCCACCACCACGCCCACTGACAAATGCGCCCTCTCACCAACTCCATCCAACTCACCCACGGATCACTCGCCCGCTCCCGGCCACCACCATGACGTCTGCCCATTGCCAGCTCCGATCTACCCTCCGAAGCCTCGGTTGAACAGGCCATTGAAATGCTTCCAGAATATTGAGGCAATGGTGAAGAGAGATAGTTCCATCGAAGATCTCTCATTCGAATATTGTCATGGTTCATTCATGTACCCTTCCTTCCTTTACTCAACTTCAAATACAATGTATCATTGGCTAATTTCCTTTGAAGCCTTTAGCAAGAAGGTGTGCAGTGGTTTTGTGGCTTGCAAGGCCACCATTATGAGAGGTATAGAGCTGAGCATGGTGGAAAGGAAAAGCTTTGCAGAAAAAAGTATGTCAGTAAAGCAGAGTTGCCTTCTGCCCAATACTGCTACTGAAGAGCTTTAG 1893 44.85 MKSPVRFKLGKQSSLAPDGHLEDLEELVKQDQTEEGIDSRVRLMYLANEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSVNITKGIFRKASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLGALLSRKREIKTMTVVRLALDIARGMNYLHENKPTPIIHRNLEPSNILRDDSGHLKVANFGVSKLLKVKEDTPSTHSETSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPPFPDKADSEVPKLYAAGERPPFRASLKRYANGLKELIEECWNEKPNSRPTFRQTITQLEFIYNRFGHKRRWKVRPLKCFQNIEAMLKRDRSRRSSFNLSSHSSASIATNFCQCDPSNWKSLTNRLSSRATTTPTDKCALSPTPSNSPTDHSPAPGHHHDVCPLPAPIYPPKPRLNRPLKCFQNIEAMVKRDSSIEDLSFEYCHGSFMYPSFLYSTSNTMYHWLISFEAFSKKVCSGFVACKATIMRGIELSMVERKSFAEKSMSVKQSCLLPNTATEEL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39034756 39043893 + CePI673135_04g021130.1 Cec04g2113 201595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2113 630 SMART ANK_2a 38 67 IPR002110 GO:0005515(InterPro)
Cec04g2113 630 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Cec04g2113 630 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
Cec04g2113 630 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Cec04g2113 630 MobiDBLite consensus disorder prediction 482 507 - -
Cec04g2113 630 SUPERFAMILY Protein kinase-like (PK-like) 166 412 IPR011009 -
Cec04g2113 630 MobiDBLite consensus disorder prediction 482 502 - -
Cec04g2113 630 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Cec04g2113 630 FunFam Integrin-linked protein kinase family 20 147 - -
Cec04g2113 630 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 60 410 IPR051681 GO:0004674(PANTHER)
Cec04g2113 630 Pfam Protein tyrosine and serine/threonine kinase 161 409 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g2113 630 CDD STKc_MAP3K-like 169 409 - -
Cec04g2113 630 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515(InterPro)
Cec04g2113 630 FunFam Integrin-linked protein kinase family 232 425 - -
Cec04g2113 630 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Cec04g2113 630 Gene3D - 14 143 IPR036770 -
Cec04g2113 630 ProSiteProfiles Protein kinase domain profile. 121 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2113 630 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Cec04g2113 630 Gene3D Transferase(Phosphotransferase) domain 1 232 460 - -
Cec04g2113 630 SUPERFAMILY Ankyrin repeat 19 132 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2113 Cec-Chr4:39034756 Cec09g1458 Cec-Chr9:22219160 1.10E-80 dispersed
Cec02g1918 Cec-Chr2:37007107 Cec04g2113 Cec-Chr4:39034756 1.60E-129 wgd
Cec03g0681 Cec-Chr3:7320698 Cec04g2113 Cec-Chr4:39034756 1.00E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71958 PF07714 PK_Tyr_Ser-Thr 2.60E-52 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2113 - - - 0.0