Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g2114 | ATGTCCAAGCCTTATCAGTCACCACTCACAAGAATGATTAGGGGAAAAGGAAAGGGAGATTTCATAAAGACAGCAAACAGCCCTTCTTTTTGTTCTGTTTTAAAAGTTCCTTCTTCAACCAGCTCTTTTCCTCATCAGCCAAAAGAAAATCTTAGATTCTCACCTTCTGATTGTGCTGCTCATTTCACCTGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTCAAAAAAGCGTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACAATTGATAGGTACAAGAAGGCATCCTCAGATTCCACCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGTTGGGCGAGTCTTTAAGTTCTTTGAGTGTAAAAGATCTGAGAAGCCTGGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGAGAAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCACACTCTGATTGGTGGATTGGATTATATTATAAGGAGTGCTGGCCATTTGCCGATTGAAAGTCTCAACTTTCTCTGA | 987 | 40.73 | MSKPYQSPLTRMIRGKGKGDFIKTANSPSFCSVLKVPSSTSSFPHQPKENLRFSPSDCAAHFTCKLQIKGFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSTNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALHTLIGGLDYIIRSAGHLPIESLNFL | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 39048396 | 39055264 | + | CePI673135_04g021140.1 | Cec04g2114 | 201596 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g2114 | 328 | Gene3D | - | 98 | 179 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec04g2114 | 328 | ProSiteProfiles | K-box domain profile. | 172 | 262 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec04g2114 | 328 | FunFam | agamous-like MADS-box protein AGL11 | 98 | 181 | - | - | |
Cec04g2114 | 328 | PRINTS | MADS domain signature | 88 | 108 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec04g2114 | 328 | PRINTS | MADS domain signature | 108 | 123 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec04g2114 | 328 | PRINTS | MADS domain signature | 123 | 144 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec04g2114 | 328 | CDD | MADS_MEF2_like | 87 | 161 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cec04g2114 | 328 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 86 | 281 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cec04g2114 | 328 | ProSiteProfiles | MADS-box domain profile. | 86 | 146 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec04g2114 | 328 | Pfam | K-box region | 168 | 256 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec04g2114 | 328 | Coils | Coil | 209 | 229 | - | - | |
Cec04g2114 | 328 | SMART | madsneu2 | 86 | 145 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec04g2114 | 328 | SUPERFAMILY | SRF-like | 87 | 163 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec04g2114 | 328 | ProSitePatterns | MADS-box domain signature. | 88 | 142 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec04g2114 | 328 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 95 | 142 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1519 | Cec-Chr4:34709076 | Cec04g2114 | Cec-Chr4:39048396 | 8.70E-36 | dispersed | |
Cec04g2114 | Cec-Chr4:39048396 | Cec08g1081 | Cec-Chr8:22650142 | 1.20E-38 | dispersed | |
Cec04g0469 | Cec-Chr4:19347343 | Cec04g2114 | Cec-Chr4:39048396 | 8.40E-32 | transposed | |
Cec08g0211 | Cec-Chr8:3858851 | Cec04g2114 | Cec-Chr4:39048396 | 3.00E-72 | transposed | |
Cec02g1920 | Cec-Chr2:37036490 | Cec04g2114 | Cec-Chr4:39048396 | 4.50E-69 | wgd | |
Cec03g0683 | Cec-Chr3:7344192 | Cec04g2114 | Cec-Chr4:39048396 | 1.00E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29439 | PF01486 | K-box | 5.00E-28 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g2114 | K09264 | - | csv:101221430 | 450.669 |