Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2114 ATGTCCAAGCCTTATCAGTCACCACTCACAAGAATGATTAGGGGAAAAGGAAAGGGAGATTTCATAAAGACAGCAAACAGCCCTTCTTTTTGTTCTGTTTTAAAAGTTCCTTCTTCAACCAGCTCTTTTCCTCATCAGCCAAAAGAAAATCTTAGATTCTCACCTTCTGATTGTGCTGCTCATTTCACCTGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTCAAAAAAGCGTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACAATTGATAGGTACAAGAAGGCATCCTCAGATTCCACCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGTTGGGCGAGTCTTTAAGTTCTTTGAGTGTAAAAGATCTGAGAAGCCTGGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGAGAAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCACACTCTGATTGGTGGATTGGATTATATTATAAGGAGTGCTGGCCATTTGCCGATTGAAAGTCTCAACTTTCTCTGA 987 40.73 MSKPYQSPLTRMIRGKGKGDFIKTANSPSFCSVLKVPSSTSSFPHQPKENLRFSPSDCAAHFTCKLQIKGFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSTNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALHTLIGGLDYIIRSAGHLPIESLNFL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39048396 39055264 + CePI673135_04g021140.1 Cec04g2114 201596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2114 328 Gene3D - 98 179 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g2114 328 ProSiteProfiles K-box domain profile. 172 262 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec04g2114 328 FunFam agamous-like MADS-box protein AGL11 98 181 - -
Cec04g2114 328 PRINTS MADS domain signature 88 108 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g2114 328 PRINTS MADS domain signature 108 123 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g2114 328 PRINTS MADS domain signature 123 144 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g2114 328 CDD MADS_MEF2_like 87 161 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec04g2114 328 PANTHER SERUM RESPONSE FACTOR HOMOLOG 86 281 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec04g2114 328 ProSiteProfiles MADS-box domain profile. 86 146 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g2114 328 Pfam K-box region 168 256 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec04g2114 328 Coils Coil 209 229 - -
Cec04g2114 328 SMART madsneu2 86 145 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g2114 328 SUPERFAMILY SRF-like 87 163 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g2114 328 ProSitePatterns MADS-box domain signature. 88 142 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec04g2114 328 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 95 142 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1519 Cec-Chr4:34709076 Cec04g2114 Cec-Chr4:39048396 8.70E-36 dispersed
Cec04g2114 Cec-Chr4:39048396 Cec08g1081 Cec-Chr8:22650142 1.20E-38 dispersed
Cec04g0469 Cec-Chr4:19347343 Cec04g2114 Cec-Chr4:39048396 8.40E-32 transposed
Cec08g0211 Cec-Chr8:3858851 Cec04g2114 Cec-Chr4:39048396 3.00E-72 transposed
Cec02g1920 Cec-Chr2:37036490 Cec04g2114 Cec-Chr4:39048396 4.50E-69 wgd
Cec03g0683 Cec-Chr3:7344192 Cec04g2114 Cec-Chr4:39048396 1.00E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29439 PF01486 K-box 5.00E-28 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2114 K09264 - csv:101221430 450.669