Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2139 ATGTCAGATGAAATGTTTAAAGATCTTTTTTATGGCGGGATGGATGAGTACGAGTCTCTAGTGAGAGCTTTTGGGGAATCATCGGATTATTCGAATAATAATAATGAAATTTCGGGGACTCCCATAAATTCTTGTGGATCTTTGTCGTCTTCGGATGCTGGAGCTGAGGAGGATGATTCTGTGAAAGAGAAGGATAAGCAGATCGACAAAGAACATGTTGAAGATGGAGGAGAGAGTTCTAAGGCTGGATCAGGTAAATCGAAGAAGAAAGGAGAGAAGAAAGAGAGAGAAGCGAGAGTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTTAAGAACAGTGCTTATCCTAGGAGCTATTACAGATGCACAACTCAAAAATGCGGAGTGAAAAAACGAGTAGAGCGATCCTTTGAAGATTCATCCATTGTAATTACAACCTACGAAGGTCAACACAACCACCCAGTCCCGACGACGCTAAGAGGAAACCTATCGGTGGCGAGCAGCGCGTTCTCACCATCCATGCTAGCACCAATGCCAGTGGTCGGTGGCATTGGGTTTCTACCTACAGAGTTGCTGAGTAATTCTTCTAGCAACAATAACCAGGCCATCAATGGTGGCGCATCCGTTTATTCACATAACAACTTTGACTACACTTATAATGAGCGACAATCAGAATATGGGCTTCTACAGGATATTTTTCCAACTCCTTCATCGTTCTTCAACCGGCAATTGTGA 780 43.08 MSDEMFKDLFYGGMDEYESLVRAFGESSDYSNNNNEISGTPINSCGSLSSSDAGAEEDDSVKEKDKQIDKEHVEDGGESSKAGSGKSKKKGEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDSSIVITTYEGQHNHPVPTTLRGNLSVASSAFSPSMLAPMPVVGGIGFLPTELLSNSSSNNNQAINGGASVYSHNNFDYTYNERQSEYGLLQDIFPTPSSFFNRQL 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39244737 39246308 + CePI673135_04g021390.1 Cec04g2139 201621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2139 259 Pfam WRKY DNA -binding domain 112 169 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g2139 259 SUPERFAMILY WRKY DNA-binding domain 103 171 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g2139 259 FunFam WRKY transcription factor 57 97 171 - -
Cec04g2139 259 Gene3D WRKY domain 95 172 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g2139 259 SMART WRKY_cls 111 170 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g2139 259 MobiDBLite consensus disorder prediction 27 98 - -
Cec04g2139 259 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 55 209 IPR044810 GO:0003700(InterPro)
Cec04g2139 259 MobiDBLite consensus disorder prediction 27 54 - -
Cec04g2139 259 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec04g2139 259 MobiDBLite consensus disorder prediction 55 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2139 Cec-Chr4:39244737 Cec09g2349 Cec-Chr9:40316282 2.60E-41 dispersed
Cec02g1926 Cec-Chr2:37122354 Cec04g2139 Cec-Chr4:39244737 1.50E-35 wgd
Cec04g2139 Cec-Chr4:39244737 Cec06g1830 Cec-Chr6:31720774 9.00E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29440 PF03106 WRKY 3.20E-25 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2139 - - - 0.0