Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2142 ATGGCTGCTTCTACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTCTCCCCCAACACCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAAACTGTCACCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGTGAGCCACCGTCCTACTTGACCGGAGAGTTCCCTGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTATCTCGCAATGGCGTGAAGTTTGGTGAAGCTGTGTGGTTCAAGGCTGGATCTCAAATCTTCAGCGAGGGAGGGCTCGACTACTTGGGGAATCCCAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGCGGCCCGCTCGGGGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTCTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAGAATTTGGCTGACCACCTTGCTGATCCAGTCAACAACAATGCCTGGGCCTATGCCACAAACTTTGTTCCTGGAAAGTGA 798 55.51 MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39269986 39270783 - CePI673135_04g021420.1 Cec04g2142 201624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2142 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cec04g2142 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cec04g2142 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cec04g2142 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Cec04g2142 265 MobiDBLite consensus disorder prediction 1 30 - -
Cec04g2142 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0717 Cec-Chr3:7759761 Cec04g2142 Cec-Chr4:39269986 1.50E-120 dispersed
Cec03g0718 Cec-Chr3:7765592 Cec04g2142 Cec-Chr4:39269986 7.40E-14 dispersed
Cec04g2142 Cec-Chr4:39269986 Cec08g0043 Cec-Chr8:798001 4.20E-55 dispersed
Cec04g2142 Cec-Chr4:39269986 Cec04g2143 Cec-Chr4:39272733 7.50E-153 tandem
Cec02g0290 Cec-Chr2:2677248 Cec04g2142 Cec-Chr4:39269986 9.90E-121 transposed
Cec04g0849 Cec-Chr4:28229799 Cec04g2142 Cec-Chr4:39269986 2.00E-26 transposed
Cec10g0627 Cec-Chr10:8406037 Cec04g2142 Cec-Chr4:39269986 1.00E-96 transposed
Cec02g1928 Cec-Chr2:37141034 Cec04g2142 Cec-Chr4:39269986 9.90E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2142 K08912 - csv:101221671 524.628