Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2143 ATGGCTGCCTCTACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTCTCCCCCAACGCCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACGGCCAGCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACTTGACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAATCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTTTGTCCCGCAATGGTGTGAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGCGAGGGAGGGCTTGACTACTTGGGAAACCCCAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGCGGCCCGCTCGGGGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTCTGGCTGACGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAAGGTCCATTGGAGAATTTGGCTGACCACCTTTCTGACCCAGTCAACAACAATGCTTGGGCCTATGCCACAAACTTTGTTCCCGGAAAGTGA 798 56.39 MAASTMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39272733 39273530 + CePI673135_04g021430.1 Cec04g2143 201625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2143 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cec04g2143 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cec04g2143 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cec04g2143 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Cec04g2143 265 MobiDBLite consensus disorder prediction 19 46 - -
Cec04g2143 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1928 Cec-Chr2:37141034 Cec04g2143 Cec-Chr4:39272733 1.70E-144 dispersed
Cec04g2143 Cec-Chr4:39272733 Cec10g0627 Cec-Chr10:8406037 8.40E-96 dispersed
Cec04g2142 Cec-Chr4:39269986 Cec04g2143 Cec-Chr4:39272733 7.50E-153 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2143 K08912 - csv:101221671 527.709