Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2144 ATGGCTTCTAGCGTCAGTTTAGCCATTTTCATGATAACTAGTTTTGTTCTAGTAAGGGTTCTGTCTACCCAACACCAATCCGCCATGGAAGTTGAATTGGAAGCCTTGAAGGCCTTCAAGAGTTGCATCCAGTTCGATCCATTGGGAGCACTTGCAGATTGGATGGACCTTAATCCCCACTGCAATTGGTCTGGCATTATATGTGACCCTGATTCCAAAAGGGTAATTTCGATTACTTTGATTGATCAGCAGCTTGAAGGCGAGATTTCTCCATTTATTGGGAACCTCTCAGCTCTCCAGGTTCTTGATTTAACTCAGAATTCGTTTACCGGGCAGATTCCAGGTGAATTGGGTTCGTGTTCCAACCTTTCTCAGCTCACTCTTTACAGAAACTTTCTTTCAGGTCACATTCCACTCCAGTTGGGAAACCTTGGGTTCCTGCAAGATGTTGATTTGGGAAATAACTTCTTAAAGGGAAGCATTCCTGATAGCATTTGCAATTGCACAAACTTGTTAGCATTTGGTGTAATATTTAATAATCTCACGGGAAGAATCCCATCAAACATAGGAAACTTAGTCGATCTTCAAATTCTGGTTGCATACGCCAACAAGCTTGAAGGTTCCATTCCCATCTCTATTGGCAAACTAGGTGCACTGCAAACTCTAGATCTTAGCCAGAACAACTTGTCTGGGAATATACCAGCGGAGATTGGGAATTTGTTGAATTTGGAGTATATTTCATTGTTTGAGAATGCTTTGGCTGGGAAAATTCCTGAGGAGATAGGTAAATGTGAGAAGCTTCTTTCTTTGGAACTATACAACAATAAGTTCAGTGGTCCAATTCCTTCACAATTAGGCTCTCTGATTCACTTACAAACCTTGCGTCTGTATACAAATAGATTAAATTCCACTATACCACAATCTCTCTTACAGTTGAAAGGTTTAACCCATTTGCTTCTCTCAGAGAACGAGTTAAGTGGAACTGTATCTTCTGATATTGGATCTTTGAGATCATTGCAGGTTTTGACTCTTCACTCGAATAGATTTTTCGGGGTGATTCCTTTGTCTTTGACAAACTTGTCAAACCTCACACATTTGTCTCTGAGCTTCAATTTTTTCACTGGTGAGATTCCGTCCAATTTAGGTCTGCTTTATAATCTGAAGAGATTGACATTGAGCAGCAATCTCCTAGCAGGTTCAATTCCATCTAGTATTATCAATTGCACCCAGCTTTCTATAATTGATCTTTCATTCAATAGGCTGACAGGAAAAATACCTATGGGATACGGGAAGTTGCAGAATCTTACTTCCCTCTTGCTTGGATCAAATAGAATTTTTGGTGAAATCCCAGATGACTTATTTAATTGCTCATCCCTTGAGGTTGTAGACCTGGCTCTAAACAATTTCACTGGATTATTAAAATCCAGTATCGGCAAGCTTTCCAATATTCGAGTTTTCAGAGCTGCATCAAATTCATTTTCTGGGGAAATTCCAGGTGACATTGGCAACTTAAGCAGGCTCAACACTTTAGTACTTGCAGAAAATAAATTTTCAGGTCAAATTCCTGGGGAGTTGTCTAAGCTTTCTCTTCTTCAAGCTCTTTCTTTGCATGACAATGCATTGGAAGGAAGGATTCCTGAAAAAATATTTGATCTGAAACAACTGGTTCATCTTCATCTGCAGAACAACAAGTTCATAGGTCCAATTCCAGATGCCATCTCAAGACTAGAGTTTCTTTCGTATTTGGACCTTCATGGAAACATGCTTAATGGATCAGTTCCTAAAAGTATGAAAGATATGCAACTGTACATGAACTTGTCATACAATCTCCTGGTAGGAGCTATTCCAGCTGAGCTTGGGTTGTTGCAAATGATACAATCCATTGACTTCTCAAACAACAATCTCACTGGGATTATTCCAGCCACGATCGGAGGTTGTAGAAATTTGTTCTTTCTTGATCTGTCAGGAAATCATCTTTCCGGTATGCTTCCAGGTAAAGCTTTTACCGGAATGAATATGCTCATGAGCTTGAACCTTTCAAGGAACAAAATAGCTGGTGAAATCCCAGAAGAGTTAGCAAATCTGGAGCACTTGTACTATTTGGACCTTTCTCAGAACCAGTTCAATGGCAGAATCCCTCAAAAACTTTCAGCTCTGAAGTATGTTAACCTTTCCTTTAATCAACTAGAAGGTCCTGTTCCAGACACCGGAATATTTCAAAAGATAAATGCTTCAAGCTTGATTGGAAATCCTGCTCTTTGTGGATCCAAGTCCTTCGCTCCTTGTGGAAAGAAGTATTTGCGACATCTATCAAAAAAGACCTTACTAATTCTCATAACCCTTGGATCTATTATTGTAGTCTTAGCTATAATTTTCTTAATTCTAGGCCTCAACCGATATCGTAAGCTTGAGAAATCTAAAAGTATTGAAAATCCTGAACCATCATTGGATTATGCATGTACCCTTAAGAGGTTTGATAAGAAGGATATGGAGATTGCAACAGAATACTTCAGCGATGAAAACATTCTAGGTTCCAGTACTTTAAGCACTGTCTACCGTGGTCAACTAGACAACGGACAGATTGTAGCTGTAAAAAGATTGAATTTGCAATATTTCTCTGGCGAATCAGATGATTACTTCAGTAGAGAAATCAAGATTCTTTGTCAACTTAGACATAGGAATTTGGTGAAAGTACTCGGATATGCTTGGGAAAGCCAGAAGCTGAAGGCTATCGTCCTTGAATACATGGAAAATGGGAACTTGGATAGAATAATACATAACCCTGGAACAGATCAAATGAGTTGTTCATTGTCAAAGAGGGTTGATATTTGTGTTTCTGTTGCTAGTGGGATGCAATACCTGCATCATGGATATGATTTCCCCATCATTCACTGCGACTTGAAACCTTCAAACATCCTTCTTGATGGAGACCGGGTAGCCCATGTGAGTGATTTTGGAACTGCTAGAGTGTTGGGGGTGCAAAGCCAAGACACAAGCAGCATTTCCTCTTCAGCAGCTTTTGAAGGCAGTATCGGATATTTGGCTCCAGAGTTTGCATACATGGGGAAAGTGACAACGAAAGTAGATGTGTTCAGTTTTGGTGTAATACTGATGGAATTTCTGACAAAGAAGAGGCCAACTGCCACCATTGAAGCTCATGGACTCCCAATCAGCTTGCAGCAACTGGTAGAGAGAGCTCTAGCAAATGGAAAGGAAGAACTTAGTCAAGTTTTGGATCCTGTGCTGGTCTTGAATGATCCAAAGGAGCAAGGGAGGTTAGAAGAACTGCTCAAATTAGCACTAAGCTGTACCGCCCCAAATCCTGATAATAGACCTGACATGAATGAAATTCTGCCTATCCTTCTGAAGTTGCGCATAGATGAATAG 3387 40.04 MASSVSLAIFMITSFVLVRVLSTQHQSAMEVELEALKAFKSCIQFDPLGALADWMDLNPHCNWSGIICDPDSKRVISITLIDQQLEGEISPFIGNLSALQVLDLTQNSFTGQIPGELGSCSNLSQLTLYRNFLSGHIPLQLGNLGFLQDVDLGNNFLKGSIPDSICNCTNLLAFGVIFNNLTGRIPSNIGNLVDLQILVAYANKLEGSIPISIGKLGALQTLDLSQNNLSGNIPAEIGNLLNLEYISLFENALAGKIPEEIGKCEKLLSLELYNNKFSGPIPSQLGSLIHLQTLRLYTNRLNSTIPQSLLQLKGLTHLLLSENELSGTVSSDIGSLRSLQVLTLHSNRFFGVIPLSLTNLSNLTHLSLSFNFFTGEIPSNLGLLYNLKRLTLSSNLLAGSIPSSIINCTQLSIIDLSFNRLTGKIPMGYGKLQNLTSLLLGSNRIFGEIPDDLFNCSSLEVVDLALNNFTGLLKSSIGKLSNIRVFRAASNSFSGEIPGDIGNLSRLNTLVLAENKFSGQIPGELSKLSLLQALSLHDNALEGRIPEKIFDLKQLVHLHLQNNKFIGPIPDAISRLEFLSYLDLHGNMLNGSVPKSMKDMQLYMNLSYNLLVGAIPAELGLLQMIQSIDFSNNNLTGIIPATIGGCRNLFFLDLSGNHLSGMLPGKAFTGMNMLMSLNLSRNKIAGEIPEELANLEHLYYLDLSQNQFNGRIPQKLSALKYVNLSFNQLEGPVPDTGIFQKINASSLIGNPALCGSKSFAPCGKKYLRHLSKKTLLILITLGSIIVVLAIIFLILGLNRYRKLEKSKSIENPEPSLDYACTLKRFDKKDMEIATEYFSDENILGSSTLSTVYRGQLDNGQIVAVKRLNLQYFSGESDDYFSREIKILCQLRHRNLVKVLGYAWESQKLKAIVLEYMENGNLDRIIHNPGTDQMSCSLSKRVDICVSVASGMQYLHHGYDFPIIHCDLKPSNILLDGDRVAHVSDFGTARVLGVQSQDTSSISSSAAFEGSIGYLAPEFAYMGKVTTKVDVFSFGVILMEFLTKKRPTATIEAHGLPISLQQLVERALANGKEELSQVLDPVLVLNDPKEQGRLEELLKLALSCTAPNPDNRPDMNEILPILLKLRIDE 1128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39273938 39277679 - CePI673135_04g021440.1 Cec04g2144 201626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2144 1128 SMART LRR_typ_2 384 408 IPR003591 -
Cec04g2144 1128 SMART LRR_typ_2 144 168 IPR003591 -
Cec04g2144 1128 SMART LRR_typ_2 622 645 IPR003591 -
Cec04g2144 1128 SMART LRR_typ_2 96 120 IPR003591 -
Cec04g2144 1128 SMART LRR_typ_2 216 240 IPR003591 -
Cec04g2144 1128 SMART LRR_typ_2 336 359 IPR003591 -
Cec04g2144 1128 SMART LRR_typ_2 528 552 IPR003591 -
Cec04g2144 1128 SMART LRR_typ_2 432 456 IPR003591 -
Cec04g2144 1128 SMART LRR_typ_2 716 741 IPR003591 -
Cec04g2144 1128 SMART LRR_typ_2 671 695 IPR003591 -
Cec04g2144 1128 SMART LRR_typ_2 646 670 IPR003591 -
Cec04g2144 1128 SMART LRR_typ_2 360 383 IPR003591 -
Cec04g2144 1128 SMART LRR_typ_2 288 312 IPR003591 -
Cec04g2144 1128 Pfam Leucine rich repeat 604 659 IPR001611 GO:0005515(InterPro)
Cec04g2144 1128 Pfam Leucine rich repeat 663 708 IPR001611 GO:0005515(InterPro)
Cec04g2144 1128 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 916 1128 - -
Cec04g2144 1128 ProSiteProfiles Protein kinase domain profile. 837 1121 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2144 1128 SUPERFAMILY Protein kinase-like (PK-like) 814 1121 IPR011009 -
Cec04g2144 1128 SMART serkin_6 837 1121 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2144 1128 Gene3D Ribonuclease Inhibitor 179 236 IPR032675 -
Cec04g2144 1128 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 798 915 - -
Cec04g2144 1128 SUPERFAMILY RNI-like 246 599 - -
Cec04g2144 1128 FunFam LRR receptor-like serine/threonine-protein kinase 190 261 - -
Cec04g2144 1128 Pfam Leucine Rich Repeat 362 382 IPR001611 GO:0005515(InterPro)
Cec04g2144 1128 Pfam Leucine Rich Repeat 267 288 IPR001611 GO:0005515(InterPro)
Cec04g2144 1128 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Cec04g2144 1128 Pfam Leucine Rich Repeat 338 360 IPR001611 GO:0005515(InterPro)
Cec04g2144 1128 Pfam Leucine Rich Repeat 555 576 IPR001611 GO:0005515(InterPro)
Cec04g2144 1128 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
Cec04g2144 1128 Pfam Leucine Rich Repeat 386 408 IPR001611 GO:0005515(InterPro)
Cec04g2144 1128 Pfam Leucine Rich Repeat 434 456 IPR001611 GO:0005515(InterPro)
Cec04g2144 1128 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Cec04g2144 1128 Pfam Protein kinase domain 838 1118 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2144 1128 Gene3D Ribonuclease Inhibitor 329 429 IPR032675 -
Cec04g2144 1128 Gene3D Ribonuclease Inhibitor 237 328 IPR032675 -
Cec04g2144 1128 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Cec04g2144 1128 FunFam Leucine-rich repeat receptor protein kinase EMS1 262 354 - -
Cec04g2144 1128 Gene3D Transferase(Phosphotransferase) domain 1 916 1128 - -
Cec04g2144 1128 SUPERFAMILY L domain-like 31 302 - -
Cec04g2144 1128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 962 974 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g2144 1128 SUPERFAMILY L domain-like 528 755 - -
Cec04g2144 1128 Gene3D Ribonuclease Inhibitor 438 666 IPR032675 -
Cec04g2144 1128 Gene3D Phosphorylase Kinase; domain 1 800 915 - -
Cec04g2144 1128 CDD STKc_IRAK 843 1124 - -
Cec04g2144 1128 FunFam Leucine-rich repeat receptor protein kinase EMS1 355 452 - -
Cec04g2144 1128 Gene3D Ribonuclease Inhibitor 667 769 IPR032675 -
Cec04g2144 1128 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 29 184 - -
Cec04g2144 1128 Gene3D Ribonuclease Inhibitor 28 178 IPR032675 -
Cec04g2144 1128 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 501 1123 IPR051564 GO:0016020(PANTHER)
Cec04g2144 1128 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 476 766 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2144 Cec-Chr4:39273938 Cec10g2139 Cec-Chr10:35935836 1.00E-57 dispersed
Cec04g1703 Cec-Chr4:36136612 Cec04g2144 Cec-Chr4:39273938 3.80E-09 transposed
Cec04g2144 Cec-Chr4:39273938 Cec06g1834 Cec-Chr6:31757981 1.30E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71959 PF00069 Pkinase 2.00E-44 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2144 K13420 - csv:101215973 1889.77