Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec04g2153 | ATGATGGCTGTGAATTTAAACGAAAGAGGTATCAGGGGAATAGTATTTACCCTTGAGACGCTTCGGAAGAATCGTGCCCATAAGCTGAAGGTGATTTTTGGGGCTTTTTCGCTTTTGCCATTGCCCTGCGGCCTGCGCCGTTGTGCTCTCCGTCGATCTTCAATTGGCAGCGCTCAGCCCGGACTCGGTCTTCCCGAGTCTGGACCGGTTTGGAGTGCCCTTCTGTTTATATCTTCTTTCGTCCGCTTCTCAATTGACATGTCTCGTGTGGCCAATCAGAAGCTCTTCGTTCTCTCAATTCAACGTTCTCTCTTACTCGCTGTCTCTCTCCGCCGGTTCGTCGACGAAGGAGCAAAGCAGAGGAAAGTCAGGGACAAGGAAATGGACGTTGGCGAAGAAATTAGGGCAGCTCACAAGCGAGATTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAAGCCATGATTAATCATAAGCGACATCGGCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGCCCCAGGGTGCTCAGGAATCCCAGTGAGTACATTCAGCCATTCTGTGACGCAGTCACAGAAACTGCTCGCAGTATCGACCCAAAATACCTTAAGGAAGGAGAGCAAGTTTTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAGTTTATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTCCATTTCTGCCCCACAACTGGAGGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAGTATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAGAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTTGAGGACGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTCTTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCTAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCACCAATATATAGTCCTGAGGACTTGAAGAACATTAAAAAGATAGCGGAAAGAGATGACACATTTGACCTTCTTGGAAATTCCCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCCGTGATACTATTGATGCTTAGTGGAGTGGAGAAGAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCACAACTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGTGTCGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAACGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGATCGTTGACACCAACAAAGAATATAGGTCTTCCAGATTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCGGAGCATGTGTTGCGTATGCACCGGTATCGTTCAGTACTTGATGGAGGCGAGGCTGGGGGCTCAGTGTATGGAAGAGAGGATGAAGCTGAAGCCGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAAAAGACCGAACGTGGTCGGAAGCGTGATACCCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCCGATCTAACTGATGAGGCATCTGAGCAAATTGCAACAGCATATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGAGGAACTCTTCCAATTACCGCGAGAACCCTGGAAACCATTATACGACTCTCAACTGCCCATGCAAAATTAAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTCGAGGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGACATGGAAGAGCGTGAACAAGAAAGAGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAACATCAAACAGTGGAAAATGATAGACCCGAACGTAGTACCAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAAATCGATGATCCTCCTTCTGAACCTGTACTTGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTGTTTGGTCAGCACATGCGTGCAAACCACCTGGATGTTATATCTATTGCAGACATTGAGAATGTCGTTAATGCTGCAGCAGATACTCATTACACTACCGCTGAAATACTGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGATAGCACGGTGCATATGATATCATGA | 2703 | 44.36 | MMAVNLNERGIRGIVFTLETLRKNRAHKLKVIFGAFSLLPLPCGLRRCALRRSSIGSAQPGLGLPESGPVWSALLFISSFVRFSIDMSRVANQKLFVLSIQRSLLLAVSLRRFVDEGAKQRKVRDKEMDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKAMINHKRHRLIINISDLHSFRDLGPRVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSVYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTDMEEREQEREKELERKRRAEHQTVENDRPERSTKRREEGSRTDTMEIDDPPSEPVLDLSAERIEAFNSLFGQHMRANHLDVISIADIENVVNAAADTHYTTAEILLLLQRLQDDNRVMIADSTVHMIS | 900 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 39326935 | 39333640 | + | CePI673135_04g021530.1 | Cec04g2153 | 201635 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec04g2153 | 900 | Pfam | MCM N-terminal domain | 139 | 225 | IPR027925 | - | |
| Cec04g2153 | 900 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 426 | 779 | IPR027417 | - | |
| Cec04g2153 | 900 | Pfam | MCM P-loop domain | 404 | 626 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2153 | 900 | CDD | MCM3 | 419 | 765 | - | - | |
| Cec04g2153 | 900 | Gene3D | - | 262 | 316 | - | - | |
| Cec04g2153 | 900 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 517 | 531 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2153 | 900 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 569 | 581 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2153 | 900 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 457 | 472 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2153 | 900 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 545 | 558 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2153 | 900 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 596 | 604 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2153 | 900 | SMART | mcm | 231 | 767 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2153 | 900 | Coils | Coil | 768 | 794 | - | - | |
| Cec04g2153 | 900 | MobiDBLite | consensus disorder prediction | 774 | 820 | - | - | |
| Cec04g2153 | 900 | SUPERFAMILY | Nucleic acid-binding proteins | 140 | 384 | IPR012340 | - | |
| Cec04g2153 | 900 | MobiDBLite | consensus disorder prediction | 774 | 825 | - | - | |
| Cec04g2153 | 900 | Gene3D | - | 236 | 366 | IPR012340 | - | |
| Cec04g2153 | 900 | Gene3D | - | 131 | 226 | - | - | |
| Cec04g2153 | 900 | SMART | AAA_5 | 458 | 611 | IPR003593 | GO:0016887(InterPro) | |
| Cec04g2153 | 900 | ProSitePatterns | MCM family signature. | 525 | 533 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cec04g2153 | 900 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 131 | 847 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) | |
| Cec04g2153 | 900 | FunFam | DNA helicase | 262 | 316 | - | - | |
| Cec04g2153 | 900 | FunFam | DNA helicase | 132 | 231 | - | - | |
| Cec04g2153 | 900 | ProSiteProfiles | MCM family domain profile. | 416 | 622 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec04g2153 | 900 | Pfam | MCM OB domain | 236 | 366 | IPR033762 | - | |
| Cec04g2153 | 900 | Gene3D | - | 398 | 788 | IPR027417 | - | |
| Cec04g2153 | 900 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 308 | 322 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec04g2153 | 900 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 334 | 346 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec04g2153 | 900 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 618 | 628 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec04g2153 | 900 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 754 | 769 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec04g2153 | 900 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 585 | 595 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cec04g2153 | 900 | Pfam | MCM AAA-lid domain | 680 | 763 | IPR041562 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec04g2153 | Cec-Chr4:39326935 | Cec09g0509 | Cec-Chr9:4363735 | 1.70E-95 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec04g2153 | K02541 | - | csv:101210889 | 1457.58 |