Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2187 ATGATTGAGATTGATTCAGAGAAAGAGTTTTTTGTGTTTGTTCGTTGGTTTCGTCGTTCTCGTTTCGTTTGCCGATTGAAGGGAGAAGATGAGTATGGTAAAGTCTCAGATATGGCTTCCAGGTCCAGCAGTCATAGCAAATCGCGGGTGGGGAGATACGAGCTGGGACGAACCCTTGGAGAGGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGCGAGACAGGGGAGAACGTAGCCATCAAAATCCTCGACAAAGAGGATATTCTCAAACACAAGATGATCGGGCAGATTAAACGTGAAATATCCACTATGAAACTCATTAGACATCCAAATGTCATTCGCATGTACGAGGTGATGGCTAGCAAGACCAAGATATATATTGTTTTGGAATTTGTAACCGGTGGAGAACTATTTGCCAAAATTGCGTGTAAGGGAAGATTGAAAGAAGACGAAGCAAGAAAGTATTTTCAGCAGTTAATAAATGCAGTGGATTATTGCCATAGTAGAGGTGTTTGTCATCGAGACCTAAAGCCAGAGAATTTATTATTGGATGCTAGTGGCGTTCTAAAAATTTCAGATTTTGGATTGAGTGCTCTACCTCAACAAGTTCGAGGTGATGGATTACTTCACACAACATGCGGAACACCCAATTATGTTGCTCCAGAGGTTATCAACAATAAAGGGTACTATGGAGCAAAGGCTGACCTATGGTCATGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTACTTGCCGTTTGAAGACTCCAATCTCATGGCATTGTATAAAAAGATATTCAAGGCAGACTTCACATGTCCTCCATGGTTCTCCTCTAGTGCCAAGAAATTAATCAAGAGAATCCTGGATCCGAATCCATTAACTAGAATTACAGTTGCTGAAGTCCTTGAGAATGATTGGTTTAAGAAAGGATACAAGCCACCCACTTTTGAAAATGACGAAATCAGTATTGATAACGTTGGTGACATCTTTAATGAATCAGGGGCCACTGATAACCTTGTTGTTGAGAGGAGAGAAGATAGATCTGCATCACTTGCATCACCTGTCACCATGAATGCGTTTGAGCTCATCTCGAAATCTCGGGGCCTCAACCTTGCCACTCTTTTTGAGAAGCAAATGGGGATAATTAAACGTGAAACGAGATTCACATCCAATTGTCCGGCAGATGAAATCATTTCGAAGATAAAAAACACTGCTGTTCCTTTGGGCTTTGATGTGAAGATTAATAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGCAAAGGTCATTTATCAGTTGCAACAGAGATTTTTCAGGTTGCTCCTTCCTTGCATATGGTGGAGCTTCGCAAAGCTGGAGGCGACACTTTAGAATTTCAAAAGTTCTACAATAACCTCTCAACTGGACTGAAAGATATCGTATGGAGATACGGAGACGAGATGGAGCAGGAAAGTAATGGTGCGGATTGTTGA 1479 42.06 MIEIDSEKEFFVFVRWFRRSRFVCRLKGEDEYGKVSDMASRSSSHSKSRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILDKEDILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFAKIACKGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKISDFGLSALPQQVRGDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEDSNLMALYKKIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITVAEVLENDWFKKGYKPPTFENDEISIDNVGDIFNESGATDNLVVERREDRSASLASPVTMNAFELISKSRGLNLATLFEKQMGIIKRETRFTSNCPADEIISKIKNTAVPLGFDVKINNFKMKLQGEKTGRKGHLSVATEIFQVAPSLHMVELRKAGGDTLEFQKFYNNLSTGLKDIVWRYGDEMEQESNGADC 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39634959 39640489 + CePI673135_04g021870.1 Cec04g2187 201669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2187 492 FunFam Non-specific serine/threonine protein kinase 353 478 - -
Cec04g2187 492 SUPERFAMILY Protein kinase-like (PK-like) 50 316 IPR011009 -
Cec04g2187 492 CDD CIPK_C 359 474 - -
Cec04g2187 492 Gene3D Kinase associated domain 1, KA1 353 478 - -
Cec04g2187 492 FunFam Non-specific serine/threonine protein kinase 44 132 - -
Cec04g2187 492 CDD STKc_SnRK3 52 307 - -
Cec04g2187 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec04g2187 492 Gene3D Phosphorylase Kinase; domain 1 41 132 - -
Cec04g2187 492 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 37 466 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cec04g2187 492 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524(InterPro)
Cec04g2187 492 Gene3D Transferase(Phosphotransferase) domain 1 133 315 - -
Cec04g2187 492 ProSiteProfiles Protein kinase domain profile. 53 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2187 492 Pfam Protein kinase domain 53 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2187 492 Pfam NAF domain 355 414 IPR004041 GO:0007165(InterPro)
Cec04g2187 492 ProSiteProfiles NAF domain profile. 353 377 IPR018451 GO:0007165(InterPro)
Cec04g2187 492 SMART serkin_6 53 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec04g2187 492 FunFam Non-specific serine/threonine protein kinase 46 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2187 Cec-Chr4:39634959 Cec05g0056 Cec-Chr5:603829 2.50E-170 dispersed
Cec03g0761 Cec-Chr3:8350328 Cec04g2187 Cec-Chr4:39634959 1.10E-210 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71960 PF00069 Pkinase 2.80E-74 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2187 - - - 0.0