Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec04g2197 ATGAAGTCGGCCATTGAAGAGTTGTTCGTTGTTGCCTTCTTGGAAGATACTTTGGTGCTTCAAATTTGTGGGTCAATTTCTTTTTGTTTGTTGGATCTCACTGAAATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAGGGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCACAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTCGATGCCCATATACCGAGTTATCCAAGCTTGCCGCCCCAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCACTGGACTTTTCTCAGCAGCCACCGGCTCAGGAGTTAATTGCCAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAACGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCAGTTATCTTTATTTGGAATGAAAAAAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTAATGCCCTCGTCCGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGCCGGTTCACGATATTTTATAATCCAAGGGCTAGCCCGTCAGAGTTCATCATACCTCTAGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTTGGTATGCGCTTTAGAATGCTATTTGAAACGGAAGAATCAAGTGTTCGTCGTTACATGGGCACTATTACTGGAATCGGTGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTTCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAATTCTCAACTAATGTGGCTTCGGGGAGATGGTCTAGATCGTGGAATTCAATCTCTGAACTTCCCCGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATACTTCAATGGTGGGTCTGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGCGCAGGCTGCTTCGCTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGACCTACTTTCATGCCACCTCAGATGTTGCAGCCTCAGCCTCAACCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCAGCAGCAGCAGCAGCAGCAGCAACAACAACAGCAACAACCACAACAGCGAGTGTTTGATCACCAACAAATGCCAAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAATCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAGCAAAGTTTTTCTGATTCTAATGCCAACCATGTAACGAGTCCCATCATTTCACCCTTGCACAGCCTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAGTTGCTTAATCTGCCTCGAACCAATCCCATGATACATTCATCTACTTGGCCGTCAAAGCGAGCTGCAGTGGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAACATGGGGACAACTCAGACTAATATCTCTCAGAATGCTATTTTGTTGCCGCCTTTTCCTGGAAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTTTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCCAATTATGTGAATACTGCTCGTAACAACTTCTCTGCCAGTCCAACTGGAACAGGGACACCACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGAGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTCGCTCACATGTTCGGCCTTGAAGGCGAGTTAGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAATTTGTCAACAGTGTGTGGTGTATCAAAATACTTTCACCAGAGGAAGTGCAGGAGATGGGCAAACGCGGCCTAGAGCTCTTGAACTCGGTCCCGATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAATAGACAGGAATCATCCAGAAATTTGAGTACCGGGATAACTTCTGTCGGGTCTCTCGAGTACTGA 2832 46.72 MKSAIEELFVVAFLEDTLVLQICGSISFCLLDLTEMRLSTAGFSPQAPEGEGRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQSLNFPGIGVAPWMQPRLDTSMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPTFMPPQMLQPQPQPQPPQTFLQGDENQHLSHSQAQSQPTVLQQEIKHQTFNNQQQQQQQQQQQQQPQQRVFDHQQMPSPISTMSQFSSASQSQSQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLSQGENMGTTQTNISQNAILLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTARNNFSASPTGTGTPPSNCIEDSGFLQSPENTGQVNPPTRTFVKVYKSRSFGRSLDISKFSSYHQLRSELAHMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPEEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39695644 39700971 - CePI673135_04g021970.1 Cec04g2197 201679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec04g2197 943 Pfam Auxin response factor 288 370 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec04g2197 943 Gene3D - 160 263 IPR015300 -
Cec04g2197 943 CDD B3_DNA 161 262 IPR003340 GO:0003677(InterPro)
Cec04g2197 943 Gene3D - 806 898 - -
Cec04g2197 943 FunFam Auxin response factor 160 264 - -
Cec04g2197 943 Pfam AUX/IAA family 807 898 IPR033389 -
Cec04g2197 943 FunFam Auxin response factor 326 398 - -
Cec04g2197 943 Pfam B3 DNA binding domain 162 264 IPR003340 GO:0003677(InterPro)
Cec04g2197 943 Gene3D - 326 398 - -
Cec04g2197 943 MobiDBLite consensus disorder prediction 515 529 - -
Cec04g2197 943 MobiDBLite consensus disorder prediction 508 611 - -
Cec04g2197 943 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 55 900 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec04g2197 943 MobiDBLite consensus disorder prediction 775 807 - -
Cec04g2197 943 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677(InterPro)
Cec04g2197 943 MobiDBLite consensus disorder prediction 530 611 - -
Cec04g2197 943 SUPERFAMILY DNA-binding pseudobarrel domain 147 291 IPR015300 -
Cec04g2197 943 SMART B3_2 162 264 IPR003340 GO:0003677(InterPro)
Cec04g2197 943 SUPERFAMILY CAD & PB1 domains 801 884 - -
Cec04g2197 943 FunFam Auxin response factor 804 898 - -
Cec04g2197 943 ProSiteProfiles PB1 domain profile. 809 893 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2197 Cec-Chr4:39695644 Cec05g2034 Cec-Chr5:32279183 3.70E-170 dispersed
Cec01g0836 Cec-Chr1:9377175 Cec04g2197 Cec-Chr4:39695644 3.00E-103 transposed
Cec01g0837 Cec-Chr1:9394576 Cec04g2197 Cec-Chr4:39695644 1.90E-62 transposed
Cec01g0839 Cec-Chr1:9405712 Cec04g2197 Cec-Chr4:39695644 1.80E-92 transposed
Cec11g0145 Cec-Chr11:1706992 Cec04g2197 Cec-Chr4:39695644 7.30E-173 transposed
Cec11g1185 Cec-Chr11:24283545 Cec04g2197 Cec-Chr4:39695644 3.90E-166 transposed
Cec03g0767 Cec-Chr3:8512698 Cec04g2197 Cec-Chr4:39695644 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29445 PF02309 AUX_IAA 2.80E-06 CL0072 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec04g2197 K14486 - csv:101210406 1663.66