Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec04g2197 | ATGAAGTCGGCCATTGAAGAGTTGTTCGTTGTTGCCTTCTTGGAAGATACTTTGGTGCTTCAAATTTGTGGGTCAATTTCTTTTTGTTTGTTGGATCTCACTGAAATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAGGGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCACAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTCGATGCCCATATACCGAGTTATCCAAGCTTGCCGCCCCAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCACTGGACTTTTCTCAGCAGCCACCGGCTCAGGAGTTAATTGCCAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAACGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCAGTTATCTTTATTTGGAATGAAAAAAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTAATGCCCTCGTCCGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGCCGGTTCACGATATTTTATAATCCAAGGGCTAGCCCGTCAGAGTTCATCATACCTCTAGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTTGGTATGCGCTTTAGAATGCTATTTGAAACGGAAGAATCAAGTGTTCGTCGTTACATGGGCACTATTACTGGAATCGGTGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTTCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAATTCTCAACTAATGTGGCTTCGGGGAGATGGTCTAGATCGTGGAATTCAATCTCTGAACTTCCCCGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATACTTCAATGGTGGGTCTGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGCGCAGGCTGCTTCGCTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGACCTACTTTCATGCCACCTCAGATGTTGCAGCCTCAGCCTCAACCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCAGCAGCAGCAGCAGCAGCAGCAACAACAACAGCAACAACCACAACAGCGAGTGTTTGATCACCAACAAATGCCAAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAATCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAGCAAAGTTTTTCTGATTCTAATGCCAACCATGTAACGAGTCCCATCATTTCACCCTTGCACAGCCTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAGTTGCTTAATCTGCCTCGAACCAATCCCATGATACATTCATCTACTTGGCCGTCAAAGCGAGCTGCAGTGGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAACATGGGGACAACTCAGACTAATATCTCTCAGAATGCTATTTTGTTGCCGCCTTTTCCTGGAAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTTTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCCAATTATGTGAATACTGCTCGTAACAACTTCTCTGCCAGTCCAACTGGAACAGGGACACCACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGAGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTCGCTCACATGTTCGGCCTTGAAGGCGAGTTAGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAATTTGTCAACAGTGTGTGGTGTATCAAAATACTTTCACCAGAGGAAGTGCAGGAGATGGGCAAACGCGGCCTAGAGCTCTTGAACTCGGTCCCGATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAATAGACAGGAATCATCCAGAAATTTGAGTACCGGGATAACTTCTGTCGGGTCTCTCGAGTACTGA | 2832 | 46.72 | MKSAIEELFVVAFLEDTLVLQICGSISFCLLDLTEMRLSTAGFSPQAPEGEGRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQSLNFPGIGVAPWMQPRLDTSMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPTFMPPQMLQPQPQPQPPQTFLQGDENQHLSHSQAQSQPTVLQQEIKHQTFNNQQQQQQQQQQQQQPQQRVFDHQQMPSPISTMSQFSSASQSQSQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLSQGENMGTTQTNISQNAILLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTARNNFSASPTGTGTPPSNCIEDSGFLQSPENTGQVNPPTRTFVKVYKSRSFGRSLDISKFSSYHQLRSELAHMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPEEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY | 943 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 39695644 | 39700971 | - | CePI673135_04g021970.1 | Cec04g2197 | 201679 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec04g2197 | 943 | Pfam | Auxin response factor | 288 | 370 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cec04g2197 | 943 | Gene3D | - | 160 | 263 | IPR015300 | - | |
Cec04g2197 | 943 | CDD | B3_DNA | 161 | 262 | IPR003340 | GO:0003677(InterPro) | |
Cec04g2197 | 943 | Gene3D | - | 806 | 898 | - | - | |
Cec04g2197 | 943 | FunFam | Auxin response factor | 160 | 264 | - | - | |
Cec04g2197 | 943 | Pfam | AUX/IAA family | 807 | 898 | IPR033389 | - | |
Cec04g2197 | 943 | FunFam | Auxin response factor | 326 | 398 | - | - | |
Cec04g2197 | 943 | Pfam | B3 DNA binding domain | 162 | 264 | IPR003340 | GO:0003677(InterPro) | |
Cec04g2197 | 943 | Gene3D | - | 326 | 398 | - | - | |
Cec04g2197 | 943 | MobiDBLite | consensus disorder prediction | 515 | 529 | - | - | |
Cec04g2197 | 943 | MobiDBLite | consensus disorder prediction | 508 | 611 | - | - | |
Cec04g2197 | 943 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 55 | 900 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cec04g2197 | 943 | MobiDBLite | consensus disorder prediction | 775 | 807 | - | - | |
Cec04g2197 | 943 | ProSiteProfiles | B3 DNA-binding domain profile. | 162 | 264 | IPR003340 | GO:0003677(InterPro) | |
Cec04g2197 | 943 | MobiDBLite | consensus disorder prediction | 530 | 611 | - | - | |
Cec04g2197 | 943 | SUPERFAMILY | DNA-binding pseudobarrel domain | 147 | 291 | IPR015300 | - | |
Cec04g2197 | 943 | SMART | B3_2 | 162 | 264 | IPR003340 | GO:0003677(InterPro) | |
Cec04g2197 | 943 | SUPERFAMILY | CAD & PB1 domains | 801 | 884 | - | - | |
Cec04g2197 | 943 | FunFam | Auxin response factor | 804 | 898 | - | - | |
Cec04g2197 | 943 | ProSiteProfiles | PB1 domain profile. | 809 | 893 | IPR053793 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g2197 | Cec-Chr4:39695644 | Cec05g2034 | Cec-Chr5:32279183 | 3.70E-170 | dispersed | |
Cec01g0836 | Cec-Chr1:9377175 | Cec04g2197 | Cec-Chr4:39695644 | 3.00E-103 | transposed | |
Cec01g0837 | Cec-Chr1:9394576 | Cec04g2197 | Cec-Chr4:39695644 | 1.90E-62 | transposed | |
Cec01g0839 | Cec-Chr1:9405712 | Cec04g2197 | Cec-Chr4:39695644 | 1.80E-92 | transposed | |
Cec11g0145 | Cec-Chr11:1706992 | Cec04g2197 | Cec-Chr4:39695644 | 7.30E-173 | transposed | |
Cec11g1185 | Cec-Chr11:24283545 | Cec04g2197 | Cec-Chr4:39695644 | 3.90E-166 | transposed | |
Cec03g0767 | Cec-Chr3:8512698 | Cec04g2197 | Cec-Chr4:39695644 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29445 | PF02309 | AUX_IAA | 2.80E-06 | CL0072 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec04g2197 | K14486 | - | csv:101210406 | 1663.66 |